Evidence map›Paper›PMID 22313051›Full record

ArticleJournal of proteome research2012

Regulation of lipid metabolism by Dicer revealed through SILAC mice.

Tai-Chung Huang, Nandini A Sahasrabuddhe, Min-Sik Kim, Derese Getnet, Yi Yang, Jonathan M Peterson, Bidyut Ghosh, Raghothama Chaerkady, Steven D Leach, Luigi Marchionni and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. MicroRNAs as Epigenetic Regulators of Obesity.Advances in experimental medicine and biology · 2024
    Review
  2. Review
  3. Article
  4. MicroRNA regulation of cholesterol metabolism.Annals of the New York Academy of Sciences · 2021
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Interplay of mitochondrial metabolism and microRNAs.Cellular and molecular life sciences : CMLS · 2017
    Review
  11. Ablation of Dicer leads to widespread perturbation of signaling pathways.Biochemical and biophysical research communications · 2015
    Article
  12. Adult-specific functions of animal microRNAs.Nature reviews. Genetics · 2013
    Review
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Tai-Chung HuangMcKusick-Nathans Institute of Genetic Medicine, Department of Biological Chemistry, Center for Metabolism and Obesity Research, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, United States.
Nandini A Sahasrabuddhe
Min-Sik Kim
Derese Getnet
Yi Yang
Jonathan M Peterson
Bidyut Ghosh
Raghothama Chaerkady
Steven D Leach
Luigi Marchionni
G William Wong
Akhilesh Pandey
Johns Hopkins University · USInstitute of Bioinformatics · IN

Funding

TCP5: ACTIVE SITE LABELING REAGENT FOR ACETYLTRANSFERASESU54RR020839 · NCRR · JOHNS HOPKINS UNIVERSITY · PI BOEKE, JEF D · 2004 to 2011
$27.4M
JHU-UMD Diabetes Research CenterP30DK079637 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI BRANCATI, FREDERICK L · 2013 to 2017
$9.7M
CTRP and Metabolic ControlR01DK084171 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI Guang William Wong · 2010 to 2026
$8.0M
Metabolic Characterization of the Novel Adipokine CTRP3F32DK084607 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI PETERSON, JONATHAN M · 2009 to 2011
$117k
NCRR NIH HHS U54 RR020839NCRR NIH HHS U54RR020839NHLBI NIH HHS HHSN268201000032CNIDDK NIH HHS F32 DK084607NIDDK NIH HHS F32DK084607NIDDK NIH HHS P30 DK079637NIDDK NIH HHS R01 DK084171
6 · The paper itself

Abstract

Dicer is a ribonuclease whose major role is to generate mature microRNAs, although additional functions have been proposed. Deletion of Dicer leads to embryonic lethality in mice. To study the role of Dicer in adults, we generated mice in which administration of tamoxifen induces deletion of Dicer. Surprisingly, disruption of Dicer in adult mice induced lipid accumulation in the small intestine. To dissect the underlying mechanisms, we carried out miRNA, mRNA, and proteomic profiling of the small intestine. The proteomic analysis was done using mice metabolically labeled with heavy lysine (SILAC mice) for an in vivo readout. We identified 646 proteins, of which 80 were up-regulated >2-fold and 75 were down-regulated. Consistent with the accumulation of lipids, Dicer disruption caused a marked decrease of microsomal triglyceride transfer protein, long-chain fatty acyl-CoA ligase 5, fatty acid binding protein, and very-long-chain fatty acyl-CoA dehydrogenase, among others. We validated these results using multiple reaction monitoring (MRM) experiments by targeting proteotypic peptides. Our data reveal a previously unappreciated role of Dicer in lipid metabolism. These studies demonstrate that a systems biology approach by integrating mouse models, metabolic labeling, gene expression profiling, and quantitative proteomics can be a powerful tool for understanding complex biological systems.

Indexed as

AnimalsDEAD-box RNA HelicasesGene Expression RegulationGene Knockout TechniquesGenetic EngineeringHistocytochemistryIntestine, SmallLipid MetabolismMass SpectrometryMiceMice, Inbred C57BLMice, KnockoutProteomeProteomicsReproducibility of ResultsRibonuclease IIIDEAD-box RNA HelicasesDicer1 protein, mouseProteomeRibonuclease III

Identifiers

PMID22313051
PMCPMC3612551
OpenAlexW2024766363

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.