Evidence map›Paper›PMID 22310887›Full record

ArticleBiometals : an international journal on the role of metal ions in biology, biochemistry, and medicine2012

Isoform specific regulation of divalent metal (ion) transporter (DMT1) by proteasomal degradation.

Michael D Garrick, Lin Zhao, Jerome A Roth, Houbo Jiang, Jian Feng, Natalie J Foot, Hazel Dalton, Sharad Kumar, Laura M Garrick

Open access · greenAbstract read
In one paragraph

Article in Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Inflaming the Brain with Iron.Antioxidants (Basel, Switzerland) · 2021
    Review
  4. Article
  5. Overdosing on iron: Elevated iron and degenerative brain disorders.Experimental biology and medicine (Maywood, N.J.) · 2020
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Ototoxicity of Divalent Metals.Neurotoxicity research · 2016
    Review
  14. Article
  15. Article
  16. Article
  17. Changes of ferrous iron and its transporters after intracerebral hemorrhage in rats.International journal of clinical and experimental pathology · 2015
    Article
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Michael D GarrickDepartment of Biochemistry, University at Buffalo, Buffalo, NY, USA. mgarrick@buffalo.edu
Lin Zhao
Jerome A Roth
Houbo Jiang
Jian Feng
Natalie J Foot
Hazel Dalton
Sharad Kumar
Laura M Garrick
University at Buffalo, State University of New York · USCentre for Cancer Biology · AU

Funding

Cellular Functions of ParkinR01NS061856 · NINDS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI FENG, JIAN · 2009 to 2013
$1.7M
NINDS NIH HHS R01 NS061856
6 · The paper itself

Abstract

Divalent metal ion transporter (DMT1) is the major transporter for iron entrance into mammalian cells and iron exit from endosomes during the transferrin cycle. Four major mRNA isoforms correspond to four protein isoforms, differing at 5'/3' and N-/C-termini, respectively. Isoforms are designated 1A versus 1B reflecting where transcription starts or +iron responsive element (+IRE) versus -IRE reflecting the presence/absence of an IRE in the 3' end of the mRNA. These differences imply regulation at transcriptional and posttranscriptional levels. Many proteins are degraded by a ubiquitination-dependent mechanism. Two different ubiquitin ligases (E3s) appear to be involved in DMT1 ubiquitination: Parkin or neuronal precursor cell-expressed developmentally downregulated 4 (Nedd4) family E3s which often utilize Nedd4 family interacting protein-1 and -2 (Ndfip1 and 2) to ubiquitinate their substrate proteins. Prior data suggest that Parkin ubiquitinates 1B DMT1 but not 1A DMT1 while Nedd4/Ndfips ligate ubiquitin to DMT1 in the duodenum where 1A/+IRE DMT1 predominates. Our assay for whether these systems target DMT1 depends on two HEK293 cell lines that express permanently transfected 1A/+IRE DMT1 or 1B/-IRE DMT1 after induction by doxycycline. Transient transfection with a Parkin construct before induction diminishes 1B/-IRE DMT1 detected by immune-blots but not 1A/+IRE DMT1. Mutant Parkin serves as a control that does not affect DMT1 levels. Thus DMT1 regulation in an isoform specific fashion can occur by ubiquitination and the events involved have implications for DMT1 function and disease processes.

Indexed as

Carrier ProteinsCation Transport ProteinsCell LineEndosomal Sorting Complexes Required for TransportHumansIronMembrane ProteinsNedd4 Ubiquitin Protein LigasesProteasome Endopeptidase ComplexProtein IsoformsSolute Carrier Family 11, Member 2UbiquitinUbiquitin-Protein LigasesCarrier ProteinsCation Transport ProteinsEndosomal Sorting Complexes Required for TransportIronMembrane ProteinsNDFIP1 protein, humanNDFIP2 protein, humanNedd4 protein, humanNedd4 Ubiquitin Protein LigasesProteasome Endopeptidase ComplexProtein IsoformsSolute Carrier Family 11, Member 2UbiquitinUbiquitin-Protein Ligases

Identifiers

PMID22310887
PMCPMC3493171
OpenAlexW2006774891

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.