Evidence map›Paper›PMID 22310223›Full record

ArticleMolecular genetics and metabolism2012

Utilizing prospective sequence analysis of SHH, ZIC2, SIX3 and TGIF in holoprosencephaly probands to describe the parameters limiting the observed frequency of mutant gene×gene interactions.

Erich Roessler, Jorge I Vélez, Nan Zhou, Maximilian Muenke

Abstract read
In one paragraph

Article in Molecular genetics and metabolism, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. NewMolecular syndromology · 2021
    Article
  8. Review
  9. eLife · 2020
    Article
  10. Article
  11. Functions of TGIF homeodomain proteins and their roles in normal brain development and holoprosencephaly.American journal of medical genetics. Part C, Seminars in medical genetics · 2018
    Article
  12. Modeling the complex etiology of holoprosencephaly in mice.American journal of medical genetics. Part C, Seminars in medical genetics · 2018
    Review
  13. Article
  14. In-depth investigations of adolescents and adults with holoprosencephaly identify unique characteristics.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Article
  15. Article
  16. Article
  17. Molecular analysis of holoprosencephaly in South America.Genetics and molecular biology · 2014
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Erich RoesslerMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892-3717, USA.
Jorge I Vélez
Nan Zhou
Maximilian Muenke

Funding

NHGRI/DIR Medical Genetics Training ProgramsZIEHG200354 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI SHCHELOCHKOV, OLEG · 2009 to 2025
$50.9M
Genetics of Brain DevelopmentZIAHG000209 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI KRUSZKA, PAUL · 2009 to 2020
$18.2M
Intramural NIH HHS Z99 HG999999Intramural NIH HHS Z99 HL999999Intramural NIH HHS Z99 MH999999
6 · The paper itself

Abstract

Clinical molecular diagnostic centers routinely screen SHH, ZIC2, SIX3 and TGIF for mutations that can help to explain holoprosencephaly and related brain malformations. Here we report a prospective Sanger sequence analysis of 189 unrelated probands referred to our diagnostic lab for genetic testing. We identified 28 novel unique mutations in this group (15%) and no instances of deleterious mutations in two genes in the same subject. Our result extends that of other diagnostic centers and suggests that among the aggregate 475 prospectively sequenced holoprosencephaly probands there is negligible evidence for direct gene-gene interactions among these tested genes. We model the predictions of the observed mutation frequency in the context of the hypothesis that gene×gene interactions are a prerequisite for forebrain malformations, i.e. the "multiple-hit" hypothesis. We conclude that such a direct interaction would be expected to be rare and that more subtle genetic and environmental interactions are a better explanation for the clinically observed inter- and intra-familial variability.

Indexed as

Models, StatisticalEye ProteinsHedgehog ProteinsHoloprosencephalyHomeobox Protein SIX3Homeodomain ProteinsHumansMutationMutation RateNerve Tissue ProteinsNuclear ProteinsProspective StudiesReal-Time Polymerase Chain ReactionRepressor ProteinsSequence AnalysisTranscription FactorsEye ProteinsHedgehog ProteinsHomeobox Protein SIX3Homeodomain ProteinsNerve Tissue ProteinsNuclear ProteinsRepressor ProteinsSHH protein, humanTGIF1 protein, humanTranscription FactorsZIC2 protein, human

Identifiers

PMID22310223
PMCPMC3309119

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.