Evidence map›Paper›PMID 22308396›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Subcellular calcium dynamics in a whole-cell model of an atrial myocyte.

Rüdiger Thul, Stephen Coombes, H Llewelyn Roderick, Martin D Bootman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Role of ryanodine receptor cooperativity in CaThe Journal of physiology · 2024
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Axial Tubule Junctions Activate Atrial CaFrontiers in physiology · 2018
    Article
  10. Article
  11. Article
  12. Mechano-chemo-transduction in cardiac myocytes.The Journal of physiology · 2017
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Axial tubule junctions control rapid calcium signaling in atria.The Journal of clinical investigation · 2016
    Article
  18. Second Messengers.Cold Spring Harbor perspectives in biology · 2016
    Review
  19. Review
  20. Role of Cytosolic Calcium Diffusion in Murine Cardiac Purkinje Cells.Clinical Medicine Insights. Cardiology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Rüdiger ThulSchool of Mathematical Sciences, University of Nottingham, Nottingham NG7 2RD, United Kingdom. ruediger.thul@nottingham.ac.uk
Stephen Coombes
H Llewelyn Roderick
Martin D Bootman
University of Nottingham · GBBabraham Institute · GBUniversity of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/B/0000C116Biotechnology and Biological Sciences Research Council BBS/E/B/0000C134Biotechnology and Biological Sciences Research Council BBS/E/B/0000H182British Heart Foundation
6 · The paper itself

Abstract

In this study, we present an innovative mathematical modeling approach that allows detailed characterization of Ca(2+) movement within the three-dimensional volume of an atrial myocyte. Essential aspects of the model are the geometrically realistic representation of Ca(2+) release sites and physiological Ca(2+) flux parameters, coupled with a computationally inexpensive framework. By translating nonlinear Ca(2+) excitability into threshold dynamics, we avoid the computationally demanding time stepping of the partial differential equations that are often used to model Ca(2+) transport. Our approach successfully reproduces key features of atrial myocyte Ca(2+) signaling observed using confocal imaging. In particular, the model displays the centripetal Ca(2+) waves that occur within atrial myocytes during excitation-contraction coupling, and the effect of positive inotropic stimulation on the spatial profile of the Ca(2+) signals. Beyond this validation of the model, our simulation reveals unexpected observations about the spread of Ca(2+) within an atrial myocyte. In particular, the model describes the movement of Ca(2+) between ryanodine receptor clusters within a specific z disk of an atrial myocyte. Furthermore, we demonstrate that altering the strength of Ca(2+) release, ryanodine receptor refractoriness, the magnitude of initiating stimulus, or the introduction of stochastic Ca(2+) channel activity can cause the nucleation of proarrhythmic traveling Ca(2+) waves. The model provides clinically relevant insights into the initiation and propagation of subcellular Ca(2+) signals that are currently beyond the scope of imaging technology.

Indexed as

Models, BiologicalCalciumCalcium SignalingHeart AtriaMyocytes, CardiacRyanodine Receptor Calcium Release ChannelStochastic ProcessesSubcellular FractionsTime FactorsCalciumRyanodine Receptor Calcium Release Channel

Identifiers

PMID22308396
PMCPMC3277557
OpenAlexW2084515554

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.