Evidence map›Paper›PMID 22307652›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Distinct energy metabolism of auditory and vestibular sensory epithelia revealed by quantitative mass spectrometry using MS2 intensity.

Kateri J Spinelli, John E Klimek, Phillip A Wilmarth, Jung-Bum Shin, Dongseok Choi, Larry L David, Peter G Gillespie

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
  3. Degradation of p0071 and p120-catenin during adherens junction disassembly byFrontiers in cellular and infection microbiology · 2023
    Article
  4. Review
  5. Article
  6. Article
  7. Comparative assessment of Fgf's diverse roles in inner ear development: A zebrafish perspective.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Review
  8. Progress in protecting vestibular hair cells.Archives of toxicology · 2021
    Review
  9. Article
  10. Molecular Composition of Vestibular Hair Bundles.Cold Spring Harbor perspectives in medicine · 2019
    Review
  11. Article
  12. Article
  13. Global Analysis of Protein Expression of Inner Ear Hair Cells.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
  14. Proteomic Analysis of the Bovine and Human Ciliary Zonule.Investigative ophthalmology & visual science · 2017
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Kateri J SpinelliOregon Hearing Research Center, Vollum Institute, Proteomics Shared Resource, Oregon Health and Science University, Portland, OR 97239, USA.
John E Klimek
Phillip A Wilmarth
Jung-Bum Shin
Dongseok Choi
Larry L David
Peter G Gillespie
Oregon Health & Science University · USVollum Institute · USGeneral Department of Preventive Medicine · VN

Funding

Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI TED S ACOTT · 1995 to 2026
$19.4M
Hair-Bundle ProteinsR01DC002368 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Peter Gordon Barr-Gillespie · 1994 to 2026
$11.3M
PORTLAND AREA COMMUNICATION RESEARCH CORE CENTERP30DC005983 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI NUTTALL, ALFRED L · 2003 to 2017
$9.0M
Hair Bundle Structure and DynamicsR01DC011034 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI BARR-GILLESPIE, PETER GORDON · 2010 to 2024
$6.4M
PROTEIN CLEAVAGE SITES IN EXPERIMENTAL CATARACTOUS LENSR01EY007755 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, LARRY L · 1995 to 2014
$3.6M
NEI NIH HHS P30 EY010572NEI NIH HHS P30 EY10572NEI NIH HHS R01 EY007755NIDCD NIH HHS P30 DC005983NIDCD NIH HHS R01 DC002368NIDCD NIH HHS R01DC002368NIDCD NIH HHS R01 DC011034
6 · The paper itself

Abstract

Measuring the abundance of many proteins over a broad dynamic range requires accurate quantitation. We show empirically that, in MS experiments, relative quantitation using summed dissociation-product ion-current intensities is accurate, albeit variable from protein to protein, and outperforms spectral counting. By applying intensities to quantify proteins in two complex but related tissues, chick auditory and vestibular sensory epithelia, we find that glycolytic enzymes are enriched threefold in auditory epithelia, whereas enzymes responsible for oxidative phosphorylation are increased at least fourfold in vestibular epithelia. This striking difference in relative use of the two ATP-production pathways likely reflects the isolation of the auditory epithelium from its blood supply, necessary to prevent heartbeat-induced mechanical disruptions. The global view of protein expression afforded by label-free quantitation with a wide dynamic range reveals molecular specialization at a tissue or cellular level.

Indexed as

Energy MetabolismAdenosine TriphosphateAnimalsChickensChromatography, LiquidCochleaElectrophoresis, Polyacrylamide GelEpitheliumGlycolysisNeovascularization, PhysiologicProteinsRNA, MessengerTandem Mass SpectrometryVestibule, LabyrinthAdenosine TriphosphateProteinsRNA, Messenger

Identifiers

PMID22307652
PMCPMC3277109
OpenAlexW2039668249

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.