Evidence map›Paper›PMID 22306765›Full record

ArticleBiochimica et biophysica acta2012

Tyrosine triad at the interface between the Rieske iron-sulfur protein, cytochrome c1 and cytochrome c2 in the bc1 complex of Rhodobacter capsulatus.

John A Kyndt, John C Fitch, Robert E Berry, Matt C Stewart, Kevin Whitley, Terry E Meyer, F Ann Walker, Michael A Cusanovich

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 88% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

John A KyndtDepartment of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721, USA. jkyndt@email.arizona.edu
John C Fitch
Robert E Berry
Matt C Stewart
Kevin Whitley
Terry E Meyer
F Ann Walker
Michael A Cusanovich
University of Arizona · US

Funding

BIOLOGICAL ELECTRON TRANSFERR01GM021277 · NIGMS · UNIVERSITY OF ARIZONA · PI MEYER, TERRANCE E · 1985 to 2009
$2.5M
NIGMS NIH HHS GM21277NIGMS NIH HHS R01 GM021277
6 · The paper itself

Abstract

A triad of tyrosine residues (Y152-154) in the cytochrome c(1) subunit (C1) of the Rhodobacter capsulatus cytochrome bc(1) complex (BC1) is ideally positioned to interact with cytochrome c(2) (C2). Mutational analysis of these three tyrosines showed that, of the three, Y154 is the most important, since its mutation to alanine resulted in significantly reduced levels, destabilization, and inactivation of BC1. A second-site revertant of this mutant that regained photosynthetic capacity was found to have acquired two further mutations-A181T and A200V. The Y152Q mutation did not change the spectral or electrochemical properties of C1, and showed wild-type enzymatic C2 reduction rates, indicating that this mutation did not introduce major structural changes in C1 nor affect overall activity. Mutations Y153Q and Y153A, on the other hand, clearly affect the redox properties of C1 (e.g. by lowering the midpoint potential as much as 117 mV in Y153Q) and the activity by 90% and 50%, respectively. A more conservative Y153F mutant on the other hand, behaves similarly to wild-type. This underscores the importance of an aromatic residue at position Y153, presumably to maintain close packing with P184, which modeling indicates is likely to stabilize the sixth heme ligand conformation.

Indexed as

Amino Acid SequenceAnimalsBiocatalysisCytochromes c1Cytochromes c2Electron Transport Complex IIIElectrophoresis, Polyacrylamide GelHemeModels, MolecularMolecular Sequence DataMutationRhodobacter capsulatusSequence AlignmentSpectrum AnalysisTyrosineCytochromes c1Cytochromes c2Electron Transport Complex IIIHemeRieske iron-sulfur proteinTyrosine

Identifiers

PMID22306765
PMCPMC3322269
OpenAlexW2120382804

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.