Evidence map›Paper›PMID 22306654›Full record

ArticleNature genetics2012

Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.

Bjarke Feenstra, Frank Geller, Camilla Krogh, Mads V Hollegaard, Sanne Gørtz, Heather A Boyd, Jeffrey C Murray, David M Hougaard, Mads Melbye

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Integrating genetics with newborn metabolomics in infantile hypertrophic pyloric stenosis.Metabolomics : Official journal of the Metabolomic Society · 2021
    Article
  5. Review
  6. Article
  7. Article
  8. Stomach development, stem cells and disease.Development (Cambridge, England) · 2016
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Genetic contribution to motility disorders of the upper gastrointestinal tract.World journal of gastrointestinal pathophysiology · 2013
    Article
  15. Article
  16. Article
  17. Infantile hypertrophic pyloric stenosis--genetics and syndromes.Nature reviews. Gastroenterology & hepatology · 2012
    Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Bjarke FeenstraDepartment of Epidemiology Research, Statens Serum Institut, Copenhagen, Denmark. fee@ssi.dk
Frank Geller
Camilla Krogh
Mads V Hollegaard
Sanne Gørtz
Heather A Boyd
Jeffrey C Murray
David M Hougaard
Mads Melbye
Statens Serum Institut · DKUniversity of Iowa · US

Funding

JH/CIDR Genotyping for Genome-Wide Association StudiesU01HG004438 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2007 to 2011
$24.2M
Genome Wide Association Coordinating CenterU01HG004446 · NHGRI · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2007 to 2011
$6.6M
Genome-wide association studies of prematurity and its complicationsU01HG004423 · NHGRI · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2007 to 2010
$1.5M
NHGRI NIH HHS U01 HG004423NHGRI NIH HHS U01HG004423NHGRI NIH HHS U01 HG004438NHGRI NIH HHS U01HG004438NHGRI NIH HHS U01 HG004446NHGRI NIH HHS U01HG004446
6 · The paper itself

Abstract

Infantile hypertrophic pyloric stenosis (IHPS) is a severe condition characterized by hypertrophy of the pyloric sphincter muscle. We conducted a genome-wide association study (GWAS) on 1,001 surgery-confirmed cases and 2,401 controls from Denmark. The six most strongly associated loci were tested in a replication set of 796 cases and 876 controls. Three SNPs reached genome-wide significance. One of these SNPs, rs11712066 (odds ratio (OR) = 1.61; P = 1.5 × 10(-17)) at 3p25.1, is located 150 kb upstream of MBNL1, which encodes a factor that regulates splicing transitions occurring shortly after birth. The second SNP, rs573872 (OR = 1.41; P = 4.3 × 10(-12)), maps to an intergenic region at 3p25.2 approximately 1.3 Mb downstream of MBNL1. The third SNP, rs29784 (OR = 1.42; P = 1.5 × 10(-15)) at 5q35.2, is 64 kb downstream of NKX2-5, which is involved in development of cardiac muscle tissue and embryonic gut development.

Indexed as

Chromosomes, Human, Pair 3Chromosomes, Human, Pair 5DenmarkGenetic Predisposition to DiseaseGenome-Wide Association StudyHomeobox Protein Nkx-2.5Homeodomain ProteinsHumansInfantOdds RatioPolymorphism, Single NucleotidePyloric Stenosis, HypertrophicRNA-Binding ProteinsTranscription FactorsHomeobox Protein Nkx-2.5Homeodomain ProteinsMBNL1 protein, humanNKX2-5 protein, humanRNA-Binding ProteinsTranscription Factors

Identifiers

PMID22306654
PMCPMC3693399
OpenAlexW1984337981

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.