Evidence map›Paper›PMID 22305530›Full record

ArticleAmerican journal of human genetics2012

Age-related somatic structural changes in the nuclear genome of human blood cells.

Lars A Forsberg, Chiara Rasi, Hamid R Razzaghian, Geeta Pakalapati, Lindsay Waite, Krista Stanton Thilbeault, Anna Ronowicz, Nathan E Wineinger, Hemant K Tiwari, Dorret Boomsma and 18 more

Abstract read
In one paragraph

Article in American journal of human genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Twins, tissue, and time: an assessment of SNPs and CNVs.Twin research and human genetics : the official journal of the International Society for Twin Studies · 2012
    Trial
  6. Article
  7. Article
  8. Deletions Rate-Limit Breast and Ovarian Cancer Initiation.bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Somatic Mosaic Chromosomal Alterations and Death of Cardiovascular Disease Causes among Cancer Survivors.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Article
  16. Biomarkers of aging.Science China. Life sciences · 2023
    Review
  17. Article
  18. Article
  19. Review
  20. Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Lars A ForsbergDepartment of Immunology, Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Sweden.
Chiara Rasi
Hamid R Razzaghian
Geeta Pakalapati
Lindsay Waite
Krista Stanton Thilbeault
Anna Ronowicz
Nathan E Wineinger
Hemant K Tiwari
Dorret Boomsma
Maxwell P Westerman
Jennifer R Harris
Robert Lyle
Magnus Essand
Fredrik Eriksson
Themistocles L Assimes
Carlos Iribarren
Eric Strachan
Terrance P O'Hanlon
Lisa G Rider
Frederick W Miller
Vilmantas Giedraitis
Lars Lannfelt
Martin Ingelsson
Arkadiusz Piotrowski
Nancy L Pedersen
Devin Absher
Jan P Dumanski

Funding

Environmental/genetic Risk Factors and Pathogenesis of Autoimmune DiseaseZIAES101074 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI RIDER, LISA · 2009 to 2025
$34.6M
UAB Biostatistics Pre-doctoral Training ProgramT32HL079888 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ALLISON, DAVID B, CUTTER, GARY R · 2005 to 2014
$2.3M
NHLBI NIH HHS T32 HL079888
6 · The paper itself

Abstract

Structural variations are among the most frequent interindividual genetic differences in the human genome. The frequency and distribution of de novo somatic structural variants in normal cells is, however, poorly explored. Using age-stratified cohorts of 318 monozygotic (MZ) twins and 296 single-born subjects, we describe age-related accumulation of copy-number variation in the nuclear genomes in vivo and frequency changes for both megabase- and kilobase-range variants. Megabase-range aberrations were found in 3.4% (9 of 264) of subjects ≥60 years old; these subjects included 78 MZ twin pairs and 108 single-born individuals. No such findings were observed in 81 MZ pairs or 180 single-born subjects who were ≤55 years old. Recurrent region- and gene-specific mutations, mostly deletions, were observed. Longitudinal analyses of 43 subjects whose data were collected 7-19 years apart suggest considerable variation in the rate of accumulation of clones carrying structural changes. Furthermore, the longitudinal analysis of individuals with structural aberrations suggests that there is a natural self-removal of aberrant cell clones from peripheral blood. In three healthy subjects, we detected somatic aberrations characteristic of patients with myelodysplastic syndrome. The recurrent rearrangements uncovered here are candidates for common age-related defects in human blood cells. We anticipate that extension of these results will allow determination of the genetic age of different somatic-cell lineages and estimation of possible individual differences between genetic and chronological age. Our work might also help to explain the cause of an age-related reduction in the number of cell clones in the blood; such a reduction is one of the hallmarks of immunosenescence.

Indexed as

Genome, HumanAdultAgedAged, 80 and overAge FactorsBlood CellsChildCohort StudiesDNA Copy Number VariationsFemaleHumansIndividualityLongitudinal StudiesMiddle AgedMutationMyelodysplastic Syndromes

Identifiers

PMID22305530
PMCPMC3276669

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.