Evidence map›Paper›PMID 22305291›Full record

ArticleCell host & microbe2012

Evolutionary and functional analyses of the interaction between the myeloid restriction factor SAMHD1 and the lentiviral Vpx protein.

Nadine Laguette, Nadia Rahm, Bijan Sobhian, Christine Chable-Bessia, Jan Münch, Joke Snoeck, Daniel Sauter, William M Switzer, Walid Heneine, Frank Kirchhoff and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 121 papers.

0numbers the graph read from it
0cells of the map it votes in
121citing papers in PubMed
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

121 citing papers in PubMed, 175 citations in OpenAlex.

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  8. Role ofSaudi journal of biological sciences · 2023
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61 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 5 countries.

Nadine LaguetteInstitut de Génétique Humaine, Centre National de la Recherche Scientifique, Unité Propre de Recherche 1142, Laboratoires de Virologie Moléculaire, 34000 Montpellier, France.
Nadia Rahm
Bijan Sobhian
Christine Chable-Bessia
Jan Münch
Joke Snoeck
Daniel Sauter
William M Switzer
Walid Heneine
Frank Kirchhoff
Frédéric Delsuc
Amalio Telenti
Monsef Benkirane
Centre National de la Recherche Scientifique · FRUniversität Ulm · DECenters for Disease Control and Prevention · USUniversity of Lausanne · CHRega Institute for Medical Research · BE

Funding

European Research Council 250333
6 · The paper itself

Abstract

SAMHD1 has recently been identified as an HIV-1 restriction factor operating in myeloid cells. As a countermeasure, the Vpx accessory protein from HIV-2 and certain lineages of SIV have evolved to antagonize SAMHD1 by inducing its ubiquitin-proteasome-dependent degradation. Here, we show that SAMHD1 experienced strong positive selection episodes during primate evolution that occurred in the Catarrhini ancestral branch prior to the separation between hominoids (gibbons and great apes) and Old World monkeys. The identification of SAMHD1 residues under positive selection led to mapping the Vpx-interaction domain of SAMHD1 to its C-terminal region. Importantly, we found that while SAMHD1 restriction activity toward HIV-1 is evolutionarily maintained, antagonism of SAMHD1 by Vpx is species-specific. The distinct evolutionary signature of SAMHD1 sheds light on the development of its antiviral specificity.

Indexed as

Evolution, MolecularHost-Pathogen InteractionsAnimalsBinding SitesCluster AnalysisHIV-1HIV-2HumansMonomeric GTP-Binding ProteinsPhylogenyPrimatesProtein BindingProtein Interaction MappingSequence Homology, Amino AcidViral Regulatory and Accessory ProteinsMonomeric GTP-Binding ProteinsViral Regulatory and Accessory ProteinsVPX protein, Human immunodeficiency virus 2

Identifiers

PMID22305291
PMCPMC3595996
OpenAlexW2078786014

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.