Evidence map›Paper›PMID 22303021›Full record

ArticleThe Journal of biological chemistry2012

The vital role of polymerase ζ and REV1 in mutagenic, but not correct, DNA synthesis across benzo[a]pyrene-dG and recruitment of polymerase ζ by REV1 to replication-stalled site.

Keiji Hashimoto, Youngjin Cho, In-Young Yang, Jun-ichi Akagi, Eiji Ohashi, Satoshi Tateishi, Niels de Wind, Fumio Hanaoka, Haruo Ohmori, Masaaki Moriya

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 45 citations in OpenAlex.

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  12. Mutagenic Replication of NChemical research in toxicology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Keiji HashimotoDepartment of Pharmacological Sciences, State University of New York, Stony Brook, New York 11794-8651, USA.
Youngjin Cho
In-Young Yang
Jun-ichi Akagi
Eiji Ohashi
Satoshi Tateishi
Niels de Wind
Fumio Hanaoka
Haruo Ohmori
Masaaki Moriya
Stony Brook University · USGakushuin University · JPKyoto University · JPKumamoto University · JPLeiden University · NLState University of New York · US

Funding

Cellullar Response to DNA AdductsR01CA076163 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI MORIYA, MASAAKI · 1999 to 2007
$1.5M
Mechanism of Mammalian Translesion DNA synthesisR01ES018833 · NIEHS · STATE UNIVERSITY NEW YORK STONY BROOK · PI MORIYA, MASAAKI · 2010 to 2014
$1.4M
Cellular Response to DNA AdductsR56CA076163 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI MORIYA, MASAAKI · 2009 to 2009
$233k
NCI NIH HHS CA076163NCI NIH HHS R01 CA076163NCI NIH HHS R56 CA076163NIEHS NIH HHS ES018833NIEHS NIH HHS R01 ES018833
6 · The paper itself

Abstract

The DNA synthesis across DNA lesions, termed translesion synthesis (TLS), is a complex process influenced by various factors. To investigate this process in mammalian cells, we examined TLS across a benzo[a]pyrene dihydrodiol epoxide-derived dG adduct (BPDE-dG) using a plasmid bearing a single BPDE-dG and genetically engineered mouse embryonic fibroblasts (MEFs). In wild-type MEFs, TLS was extremely miscoding (>90%) with G → T transversions being predominant. Knockout of the Rev1 gene decreased both the TLS efficiency and the miscoding frequency. Knockout of the Rev3L gene, coding for the catalytic subunit of pol ζ, caused even greater decreases in these two TLS parameters; almost all residual TLS were error-free. Thus, REV1 and pol ζ are critical to mutagenic, but not accurate, TLS across BPDE-dG. The introduction of human REV1 cDNA into Rev1(-/-) MEFs restored the mutagenic TLS, but a REV1 mutant lacking the C terminus did not. Yeast and mammalian three-hybrid assays revealed that the REV7 subunit of pol ζ mediated the interaction between REV3 and the REV1 C terminus. These results support the hypothesis that REV1 recruits pol ζ through the interaction with REV7. Our results also predict the existence of a minor REV1-independent pol ζ recruitment pathway. Finally, although mutagenic TLS across BPDE-dG largely depends on RAD18, experiments using Polk(-/-) Polh(-/-) Poli(-/-) triple-gene knockout MEFs unexpectedly revealed that another polymerase(s) could insert a nucleotide opposite BPDE-dG. This indicates that a non-Y family polymerase(s) can insert a nucleotide opposite BPDE-dG, but the subsequent extension from miscoding termini depends on REV1-polζ in a RAD18-dependent manner.

Indexed as

DNA ReplicationMutagenesis7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxideAmino Acid SequenceAnimalsCell Cycle ProteinsDeoxyguanosineDNA AdductsDNA-Binding ProteinsDNA DamageDNA-Directed DNA PolymeraseHumansMad2 ProteinsMiceMice, KnockoutMolecular Sequence Data7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide7,8-dihydroxy-9,10-epoxide-7,8,9,10-tetrahydrobenzo(a)pyrene-10-deoxyguanosineCell Cycle ProteinsDeoxyguanosineDNA AdductsDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA polymerase zetaMAD2L2 protein, humanMad2l2 protein, mouseMad2 ProteinsNuclear ProteinsNucleotidyltransferasesProteinsREV1 protein, humanRev1 protein, mouseREV3L protein, humanREV3L protein, mouseY-Family DNA Polymerases

Identifiers

PMID22303021
PMCPMC3308759
OpenAlexW2063102260

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.