Evidence map›Paper›PMID 22302717›Full record

ArticleGenes, chromosomes & cancer2012

The microRNAs, MiR-31 and MiR-375, as candidate markers in Barrett's esophageal carcinogenesis.

Rom S Leidner, Lakshmeswari Ravi, Patrick Leahy, Yanwen Chen, Beth Bednarchik, Mirte Streppel, Marcia Canto, Jean S Wang, Anirban Maitra, Joseph Willis and 5 more

Abstract read
In one paragraph

Article in Genes, chromosomes & cancer, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 2 pooled it
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 2 syntheses or guidelines pooled it, 79 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. NamiRNA-Enhancer Network: The Changing Era Challenge and Chance of miRNA.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Barrett's Esophagus and Esophageal Adenocarcinoma Biomarkers.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Article
  11. Review
  12. Differential MicroRNA Signatures in the Pathogenesis of Barrett's Esophagus.Clinical and translational gastroenterology · 2020
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. microRNAs Make the Call in Cancer Personalized Medicine.Frontiers in cell and developmental biology · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Rom S LeidnerDivision of Hematology and Oncology, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA.
Lakshmeswari Ravi
Patrick Leahy
Yanwen Chen
Beth Bednarchik
Mirte Streppel
Marcia Canto
Jean S Wang
Anirban Maitra
Joseph Willis
Sanford D Markowitz
Jill Barnholtz-Sloan
Mark D Adams
Amitabh Chak
Kishore Guda
Case Western Reserve University · USUniversity School · USJohns Hopkins University · USJohns Hopkins Medicine · USUniversity Hospitals Case Medical Center · USWashington University in St. Louis · US

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARK R CHANCE · 1987 to 2026
$142.3M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024989 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI DAVIS, PAMELA B · 2007 to 2011
$53.7M
Targeting 15-PGDH in Colon Cancer Prognosis, Prediction, Treatment and PreventionP50CA150964 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARKOWITZ, SANFORD D. · 2011 to 2022
$24.6M
TRANSLATIONAL RESEARCH ONCOLOGY TRAINING GRANTK12CA076917 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI GERSON, STANTON L. · 1997 to 2022
$14.2M
Whole Exome Approaches for Esophageal Adenocarcinoma Susceptibility GenesU54CA163060 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI CHAK, AMITABH, GUDA, KISHORE · 2011 to 2022
$14.0M
Identify and validate novel epigenetic molecular markers for colorectal neoplasmU01CA152756 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GRADY, WILLIAM MALLORY, GUDA, KISHORE · 2010 to 2021
$6.7M
PATIENT ORIENTED RESEARCH IN BARRETT'S ESOPHAGUSK24DK002800 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI CHAK, AMITABH · 2001 to 2010
$1.6M
Novel O-glycosylation Gene Mutations in Colon CancerK08CA148980 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI GUDA, KISHORE · 2010 to 2014
$682k
Methylation in Cancer Progression of Barrett's EsophagusK23DK068149 · NIDDK · WASHINGTON UNIVERSITY · PI WANG, JEAN S · 2006 to 2010
$669k
Insulin/IGF-1 Pathway in Barrett's EsophagusR21CA135692 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI CHAK, AMITABH · 2008 to 2009
$420k
NCI NIH HHS CA135692NCI NIH HHS CA150964NCI NIH HHS CA152756NCI NIH HHS CA163060NCI NIH HHS K08 CA148980NCI NIH HHS K12 CA076917NCI NIH HHS P30 CA043703NCI NIH HHS P50 CA150964NCI NIH HHS R21 CA135692NCI NIH HHS U01 CA152756NCI NIH HHS U54 CA163060NCRR NIH HHS UL1 RR024989NIDDK NIH HHS K23 DK068149NIDDK NIH HHS K24 DK002800
6 · The paper itself

Abstract

There is a critical need to identify molecular markers that can reliably aid in stratifying esophageal adenocarcinoma (EAC) risk in patients with Barrett's esophagus. MicroRNAs (miRNA/miR) are one such class of biomolecules. In the present cross-sectional study, we characterized miRNA alterations in progressive stages of neoplastic development, i.e., metaplasia-dysplasia-adenocarcinoma, with an aim to identify candidate miRNAs potentially associated with progression. Using next generation sequencing (NGS) as an agnostic discovery platform, followed by quantitative real-time PCR (qPCR) validation in a total of 20 EACs, we identified 26 miRNAs that are highly and frequently deregulated in EACs (≥ 4-fold in >50% of cases) when compared to paired normal esophageal squamous (nSQ) tissue. We then assessed the 26 EAC-derived miRNAs in laser microdissected biopsy pairs of Barrett's metaplasia (BM)/nSQ (n = 15), and high-grade dysplasia (HGD)/nSQ (n = 14) by qPCR, to map the timing of deregulation during progression from BM to HGD and to EAC. We found that 23 of the 26 candidate miRNAs were deregulated at the earliest step, BM, and therefore noninformative as molecular markers of progression. Two miRNAs, miR-31 and -31*, however, showed frequent downregulation only in HGD and EAC cases suggesting association with transition from BM to HGD. A third miRNA, miR-375, showed marked downregulation exclusively in EACs and in none of the BM or HGD lesions, suggesting its association with progression to invasive carcinoma. Taken together, we propose miR-31 and -375 as novel candidate microRNAs specifically associated with early- and late-stage malignant progression, respectively, in Barrett's esophagus.

Indexed as

AdolescentAdultAgedAged, 80 and overBarrett EsophagusBiomarkers, TumorCell Transformation, NeoplasticDisease ProgressionEsophageal NeoplasmsFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMetaplasiaMicroRNAsBiomarkers, TumorMicroRNAsMIRN31 microRNA, humanMIRN375 microRNA, human

Identifiers

PMID22302717
PMCPMC3547654
OpenAlexW1989481544

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.