Evidence map›Paper›PMID 22301145›Full record

ArticleJournal of virology2012

Human immunodeficiency virus type 1 capsid mutation N74D alters cyclophilin A dependence and impairs macrophage infection.

Zandrea Ambrose, KyeongEun Lee, Jean Ndjomou, Hongzhan Xu, Ilker Oztop, James Matous, Taichiro Takemura, Derya Unutmaz, Alan Engelman, Stephen H Hughes and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 96 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. The cyclophilin A-binding loop of the capsid regulates the human TRIM5α sensitivity of nonpandemic HIV-1.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Review
  11. Article
  12. Article
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  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
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  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Zandrea AmbroseDivision of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA. zaa4@pitt.edu
KyeongEun Lee
Jean Ndjomou
Hongzhan Xu
Ilker Oztop
James Matous
Taichiro Takemura
Derya Unutmaz
Alan Engelman
Stephen H Hughes
Vineet N KewalRamani
University of Pittsburgh · USNational Cancer Institute · USDana-Farber Cancer Institute · USFrederick National Laboratory for Cancer Research · USNew York University · US

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
UNIVERSITY OF PITTSBURGH CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTE: BPCAUL1RR024153 · NCRR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2006 to 2011
$73.9M
X-Ray Core P50GM082251 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CALERO, GUILLERMO ALBERTO · 2007 to 2018
$48.1M
IntegraseZIABC011426 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HUGHES, STEPHEN H · 2012 to 2022
$14.0M
The role of CPSF6 in HIV-1 infectionZIABC010487 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KEWALRAMANI, VINEET N · 2009 to 2025
$13.0M
Nuclear Localization of HIV-1 Preintegration ComplexesR01AI052014 · NIAID · DANA-FARBER CANCER INSTITUTE · PI ENGELMAN, ALAN N. · 2003 to 2025
$11.4M
Immunobiology of Regulatory T Cells in HIV InfectionR01AI065303 · NIAID · VANDERBILT UNIVERSITY · PI UNUTMAZ, DERYA · 2005 to 2015
$4.3M
Mechanisms of Intrinsic Resistance to HIV Infection in Primary Human T CellsR21AI078839 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI UNUTMAZ, DERYA · 2008 to 2009
$466k
NCRR NIH HHS 1 UL1 RR024153NCRR NIH HHS UL1 RR024153NIAID NIH HHS AI052014NIAID NIH HHS AI078839NIAID NIH HHS P30 AI060354NIAID NIH HHS R01 AI052014NIAID NIH HHS R01 AI065303NIAID NIH HHS R21 AI078839NIGMS NIH HHS GM082251NIGMS NIH HHS P50 GM082251
6 · The paper itself

Abstract

The antiviral factor CPSF6-358 interferes with the nuclear entry of human immunodeficiency virus type 1 (HIV-1). HIV-1 acquires resistance to CPSF6-358 through the N74D mutation of the capsid (CA), which alters its nuclear entry pathway. Here we show that compared to wild-type (WT) HIV-1, N74D HIV-1 is more sensitive to cyclosporine, has increased sensitivity to nevirapine, and is impaired in macrophage infection prior to reverse transcription. These phenotypes suggest a difference in the N74D reverse transcription complex that manifests early after infection and prior to interaction with the nuclear pore. Overall, our data indicate that N74D HIV-1 replication in transformed cells requires cyclophilin A but is dependent on other interactions in macrophages.

Indexed as

MutationActive Transport, Cell NucleusAnimalsAntiviral Restriction FactorsAotidaeCapsid ProteinsCarrier ProteinsCell DivisionCell LineCyclophilin AHIV-1HumansMacrophagesMicrobial Sensitivity TestsReverse Transcriptase InhibitorsRNA-Directed DNA PolymeraseAntiviral Restriction FactorsCapsid ProteinsCarrier ProteinsCyclophilin AReverse Transcriptase InhibitorsRNA-Directed DNA PolymeraseTRIM5 protein, humanTripartite Motif ProteinsUbiquitin-Protein Ligases

Identifiers

PMID22301145
PMCPMC3318671
OpenAlexW2044993753

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.