ArticleJournal of clinical microbiology2012
Identification of hepatitis C virus transmission using a next-generation sequencing approach.
Article in Journal of clinical microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
21 citing papers in PubMed.
- Algorithms for Short-Read Viral Haplotype Reconstruction: Challenges, Solutions, and Perspectives.Methods in molecular biology (Clifton, N.J.) · 2025Review
- Societal Implications of the Internet of Pathogens.Journal of clinical microbiology · 2019Article
- Big Data Analytics, Infectious Diseases and Associated Ethical Impacts.Philosophy & technology · 2019Article
- Insights From Deep Sequencing of the HBV Genome-Unique, Tiny, and Misunderstood.Gastroenterology · 2019Review
- Next-generation sequencing analysis of a cluster of hepatitis C virus infections in a haematology and oncology center.PloS one · 2018Article
- Article
- Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum.Bioinformatics (Oxford, England) · 2015Article
- Hepatitis C virus genetic variability and evolution.World journal of hepatology · 2015Review
- Advanced molecular surveillance of hepatitis C virus.Viruses · 2015Review
- The Influence of Hepatitis C Virus Genetic Region on Phylogenetic Clustering Analysis.PloS one · 2015Article
- Hepatitis C virus molecular evolution: transmission, disease progression and antiviral therapy.World journal of gastroenterology · 2014Review
- Article
- Deep sequencing: becoming a critical tool in clinical virology.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2014Review
- Transmission of hepatitis C virus among intravenous drug users in the Uppsala region of Sweden.Infection ecology & epidemiology · 2014Article
- Deep sequencing of evolving pathogen populations: applications, errors, and bioinformatic solutions.Microbial informatics and experimentation · 2014Article
- Vertical transmission of hepatitis C virus: a tale of multiple outcomes.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2013Article
- Molecular evolution in court: analysis of a large hepatitis C virus outbreak from an evolving source.BMC biology · 2013Article
- Rapid hepatitis C virus divergence among chronically infected individuals.Journal of clinical microbiology · 2013Article
- Ultradeep pyrosequencing of hepatitis C virus hypervariable region 1 in quasispecies analysis.BioMed research international · 2013Article
- Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome.BMC genomics · 2012Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Here, we describe a transmission event of hepatitis C virus (HCV) among injection drug users. Next-generation sequencing (NGS) was used to assess the intrahost viral genetic variation. Deep amplicon sequencing of HCV hypervariable region 1 allowed for a detailed analysis of the structure of the viral population. Establishment of the genetic relatedness between cases was accomplished by phylogenetic analysis. NGS is a powerful tool with applications in molecular epidemiology studies and outbreak investigations.
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Registered trials
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