Evidence map›Paper›PMID 22300758›Full record

ReviewTrends in microbiology2012

A metabolic network approach for the identification and prioritization of antimicrobial drug targets.

Arvind K Chavali, Kevin M D'Auria, Erik L Hewlett, Richard D Pearson, Jason A Papin

Open access · greenAbstract readEvaluation StudyReview
In one paragraph

Review in Trends in microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 112 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Antimicrobial Compounds from Microorganisms.Antibiotics (Basel, Switzerland) · 2022
    Review
  11. Article
  12. Review
  13. A Systematic Strategy to Find Potential Therapeutic Targets forFrontiers in molecular biosciences · 2021
    Article
  14. Review
  15. Antibiotic resistance: Time of synthesis in a post-genomic age.Computational and structural biotechnology journal · 2021
    Review
  16. Article
  17. Genome-Scale Metabolic Model of the Human PathogenJournal of fungi (Basel, Switzerland) · 2020
    Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Arvind K ChavaliDepartment of Biomedical Engineering, University of Virginia, Charlottesville, VA 22908, USA.
Kevin M D'Auria
Erik L Hewlett
Richard D Pearson
Jason A Papin
University of Virginia · US

Funding

Vaccine strategy for broad spectrum protection agains non-typhoidal salmonellU54AI057168 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI WHITE, JUDITH M. · 2003 to 2013
$91.5M
INFECTIOUS DISEASES TRAINING PROGRAMT32AI007046 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Alison K Criss, William A Petri · 1985 to 2026
$15.3M
Network Analysis of Pathogenicity in Pseudomonas aeruginosaR01GM088244 · NIGMS · UNIVERSITY OF VIRGINIA · PI PAPIN, JASON · 2010 to 2014
$1.5M
NIAID NIH HHS 5T32 AI0070465NIAID NIH HHS 5U54 AI057168NIAID NIH HHS T32 AI007046NIAID NIH HHS U54 AI057168NIGMS NIH HHS R01 GM088244
6 · The paper itself

Abstract

For many infectious diseases, novel treatment options are needed in order to address problems with cost, toxicity and resistance to current drugs. Systems biology tools can be used to gain valuable insight into pathogenic processes and aid in expediting drug discovery. In the past decade, constraint-based modeling of genome-scale metabolic networks has become widely used. Focusing on pathogen metabolic networks, we review in silico strategies used to identify effective drug targets and highlight recent successes as well as limitations associated with such computational analyses. We further discuss how accounting for the host environment and even targeting the host may offer new therapeutic options. These systems-level approaches are beginning to provide novel avenues for drug targeting against infectious agents.

Indexed as

Metabolic Networks and PathwaysAnimalsAnti-Bacterial AgentsBacteriaBacterial InfectionsDrug DiscoveryHumansSystems BiologyAnti-Bacterial Agents

Identifiers

PMID22300758
PMCPMC3299924
OpenAlexW2031849942

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.