Evidence map›Paper›PMID 22298779›Full record

ArticleThe Journal of biological chemistry2012

Bivalent carbohydrate binding is required for biological activity of Clitocybe nebularis lectin (CNL), the N,N'-diacetyllactosediamine (GalNAcβ1-4GlcNAc, LacdiNAc)-specific lectin from basidiomycete C. nebularis.

Jure Pohleven, Miha Renko, Špela Magister, David F Smith, Markus Künzler, Borut Štrukelj, Dušan Turk, Janko Kos, Jerica Sabotič

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  3. Modulation ofFrontiers in cellular and infection microbiology · 2024
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  5. Review
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  8. Article
  9. Article
  10. Review
  11. Article
  12. CNL-Molecules (Basel, Switzerland) · 2019
    Review
  13. Article
  14. Article
  15. Cytotoxic protein from the mushroomProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Jure PohlevenDepartment of Biotechnology, Jožef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia,. Electronic address: jure.pohleven@ijs.si.
Miha RenkoDepartment of Biochemistry and Molecular and Structural Biology, Jožef Stefan Institute and Centre of Excellence CIPKeBiP, Jamova 39, SI-1000 Ljubljana, Slovenia.
Špela MagisterDepartment of Biotechnology, Jožef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia.
David F SmithDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322.
Markus KünzlerInstitute of Microbiology, Department of Biology, ETH Zürich, Wolfgang-Pauli-Strasse 10, CH-8093 Zürich, Switzerland, and.
Borut ŠtrukeljDepartment of Biotechnology, Jožef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia,; Faculty of Pharmacy, University of Ljubljana, Aškerčeva 7, SI-1000 Ljubljana, Slovenia.
Dušan TurkDepartment of Biochemistry and Molecular and Structural Biology, Jožef Stefan Institute and Centre of Excellence CIPKeBiP, Jamova 39, SI-1000 Ljubljana, Slovenia.
Janko KosDepartment of Biotechnology, Jožef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia,; Faculty of Pharmacy, University of Ljubljana, Aškerčeva 7, SI-1000 Ljubljana, Slovenia.
Jerica SabotičDepartment of Biotechnology, Jožef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia.
Jožef Stefan Institute · SIJožef Stefan International Postgraduate School · SIEmory University · USETH Zurich · CHUniversity of Ljubljana · SI

Funding

Structural Basis of Immune Recognition of Glycosylated AntigensU54GM062116 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SASISEKHARAN, RAM · 2001 to 2010
$80.3M
NIGMS NIH HHS GM62116NIGMS NIH HHS U54 GM062116
6 · The paper itself

Abstract

Lectins are carbohydrate-binding proteins that exert their biological activity by binding to specific cell glycoreceptors. We have expressed CNL, a ricin B-like lectin from the basidiomycete Clitocybe nebularis in Escherichia coli. The recombinant lectin, rCNL, agglutinates human blood group A erythrocytes and is specific for the unique glycan N,N'-diacetyllactosediamine (GalNAcβ1-4GlcNAc, LacdiNAc) as demonstrated by glycan microarray analysis. We here describe the crystal structures of rCNL in complex with lactose and LacdiNAc, defining its interactions with the sugars. CNL is a homodimeric lectin, each of whose monomers consist of a single ricin B lectin domain with its β-trefoil fold and one carbohydrate-binding site. To study the mode of CNL action, a nonsugar-binding mutant and nondimerizing monovalent CNL mutants that retain carbohydrate-binding activity were prepared. rCNL and the mutants were examined for their biological activities against Jurkat human leukemic T cells and the hypersensitive nematode Caenorhabditis elegans mutant strain pmk-1. rCNL was toxic against both, although the mutants were inactive. Thus, the bivalent carbohydrate-binding property of homodimeric CNL is essential for its activity, providing one of the rare pieces of evidence that certain activities of lectins are associated with their multivalency.

Indexed as

ABO Blood-Group SystemAgaricalesAmino Acid SequenceAnimalsCaenorhabditis elegansCrystallography, X-RayErythrocytesEscherichia coliHumansJurkat CellsLactoseMolecular Sequence DataMutationProtein BindingProtein MultimerizationProtein Structure, QuaternaryABO Blood-Group SystemCNL protein, Clitocybe nebularisLactoseN-acetylgalactosaminyl-1-4-N-acetylglucosamineRecombinant ProteinsRicin

Identifiers

PMID22298779
PMCPMC3323013
OpenAlexW2092122285

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.