Evidence map›Paper›PMID 22295882›Full record

ArticleJournal of the American Chemical Society2012

Trapping of an intermediate in the reaction catalyzed by flavin-dependent thymidylate synthase.

Tatiana V Mishanina, Eric M Koehn, John A Conrad, Bruce A Palfey, Scott A Lesley, Amnon Kohen

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Synthesis and application of isotopically labeled flavin nucleotides.Journal of labelled compounds & radiopharmaceuticals · 2015
    Article
  12. Article
  13. Article
  14. Article
  15. Substrate activation in flavin-dependent thymidylate synthase.Journal of the American Chemical Society · 2014
    Article
  16. Article
  17. Article
  18. Article
  19. Folate binding site of flavin-dependent thymidylate synthase.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Tatiana V MishaninaDepartment of Chemistry, The University of Iowa, Iowa City, Iowa 52242, USA.
Eric M Koehn
John A Conrad
Bruce A Palfey
Scott A Lesley
Amnon Kohen
University of Iowa · USUniversity of Michigan–Ann Arbor · USGenomics Institute of the Novartis Research Foundation · US

Funding

Structure Determination Core at SSRLU54GM094586 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2010 to 2014
$40.1M
MICHIGAN MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008270 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BROOKS, CHARLES L · 1988 to 2012
$4.5M
Tunneling and dynamic studies with DHFRR01GM065368 · NIGMS · UNIVERSITY OF IOWA · PI CHEATUM, CHRISTOPHER M · 2002 to 2017
$3.5M
Mechanisms of Dihydroorotate DehydrogenasesR01GM061087 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PALFEY, BRUCE A · 2002 to 2011
$2.1M
NIGMS NIH HHS GM08270NIGMS NIH HHS GM61087NIGMS NIH HHS R01 GM061087NIGMS NIH HHS R01 GM065368NIGMS NIH HHS T32 GM008270NIGMS NIH HHS U54 GM094586
6 · The paper itself

Abstract

Thymidylate is a DNA nucleotide that is essential to all organisms and is synthesized by the enzyme thymidylate synthase (TSase). Several human pathogens rely on an alternative flavin-dependent thymidylate synthase (FDTS), which differs from the human TSase both in structure and molecular mechanism. It has recently been shown that FDTS catalysis does not rely on an enzymatic nucleophile and that the proposed reaction intermediates are not covalently bound to the enzyme during catalysis, an important distinction from the human TSase. Here we report the chemical trapping, isolation, and identification of a derivative of such an intermediate in the FDTS-catalyzed reaction. The chemically modified reaction intermediate is consistent with currently proposed FDTS mechanisms that do not involve an enzymatic nucleophile, and it has never been observed during any other TSase reaction. These findings establish the timing of the methylene transfer during FDTS catalysis. The presented methodology provides an important experimental tool for further studies of FDTS, which may assist efforts directed toward the rational design of inhibitors as leads for future antibiotics.

Indexed as

BiocatalysisFlavinsHumansMolecular StructureOxidation-ReductionThymidineThymidylate SynthaseFlavinsThymidineThymidylate Synthase

Identifiers

PMID22295882
PMCPMC3296878
OpenAlexW2025872648

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.