Evidence map›Paper›PMID 22293502›Full record

ArticleFEBS letters2012

Selenomodification of tRNA in archaea requires a bipartite rhodanese enzyme.

Dan Su, Temitope T Ojo, Dieter Söll, Michael J Hohn

Open access · bronzeAbstract read
In one paragraph

Article in FEBS letters, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Microbiology spectrum · 2024
    Article
  4. Naturally occurring modified ribonucleosides.Wiley interdisciplinary reviews. RNA · 2020
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Objective: biochemical function.Frontiers in genetics · 2014
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Dan SuDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520-8114, USA.
Temitope T Ojo
Dieter Söll
Michael J Hohn
Yale University · US

Funding

TRANSFER RNAR01GM022854 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER · 1985 to 2016
$21.3M
SciBay: A New Methodology for Scientific Collaboration and Gene Function DetermiRC2GM092602 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI KASIF, SIMON, ROBERTS, RICHARD J · 2009 to 2010
$4.0M
TRANSFER RNAR37GM022854 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER G · 1991 to 2000
$786k
NIGMS NIH HHS 1RC2GM092602-01NIGMS NIH HHS GM22854NIGMS NIH HHS R01 GM022854NIGMS NIH HHS R37 GM022854NIGMS NIH HHS RC2 GM092602
6 · The paper itself

Abstract

5-Methylaminomethyl-2-selenouridine (mnm(5)Se(2)U) is found in the first position of the anticodon in certain tRNAs from bacteria, archaea and eukaryotes. This selenonucleoside is formed in Escherichia coli from the corresponding thionucleoside mnm(5)S(2)U by the monomeric enzyme YbbB. This nucleoside is present in the tRNA of Methanococcales, yet the corresponding 2-selenouridine synthase is unknown in archaea and eukaryotes. Here we report that a bipartite ybbB ortholog is present in all members of the Methanococcales. Gene deletions in Methanococcus maripaludis and in vitro activity assays confirm that the two proteins act in trans to form in tRNA a selenonucleoside, presumably mnm(5)Se(2)U. Phylogenetic data suggest a primal origin of seleno-modified tRNAs.

Indexed as

Amino Acid SequenceAnimalsArchaeal ProteinsLigasesMethanococcusModels, MolecularMolecular Sequence DataOrganoselenium CompoundsPhylogenyProtein Structure, TertiaryRNA, TransferSeleniumSequence AlignmentThiosulfate SulfurtransferaseUridine5-((methylamino)methyl)-2-selenouridineArchaeal ProteinsLigasesOrganoselenium CompoundsRNA, TransferSeleniumThiosulfate SulfurtransferaseUridine

Identifiers

PMID22293502
PMCPMC3309168
OpenAlexW1975269791

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.