Evidence map›Paper›PMID 22293432›Full record

ArticleThe Journal of infectious diseases2012

Genetic diversity of recently acquired and prevalent HIV, hepatitis B virus, and hepatitis C virus infections in US blood donors.

Eric Delwart, Elizabeth Slikas, Susan L Stramer, Hany Kamel, Debra Kessler, David Krysztof, Leslie H Tobler, Danielle M Carrick, Whitney Steele, Deborah Todd and 4 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03791814 (A Prospective Cohort Study to Improve HCV Care Using Multidisciplinary Approach to the Treatment of Chronic Hepatitis C in Dialysis Patients), which is not on this map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03791814 phase4withdrawnnot on this mapstarted 2019, after this paper: background citation

A Prospective Cohort Study to Improve HCV Care Using Multidisciplinary Approach to the Treatment of Chronic Hepatitis C in Dialysis Patients: The MATCH-D Study

TypeinterventionalSponsorAlbert Einstein Healthcare NetworkRan2019 to 2019Enrolled0ConditionsHepatitis CArmsZepatier
3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 59 citations in OpenAlex.

  1. Trial
  2. Article
  3. [Epidemiology of hepatitis C virus infection in ColombiaEpidemiologia da infecção pelo vírus da hepatite C na Colômbia].Revista panamericana de salud publica = Pan American journal of public health · 2021
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  8. Review
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  15. Review
  16. Article
  17. Phylogenetic and geospatial evaluation of HIV-1 subtype diversity at the largest HIV center in Rhode Island.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2014
    Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Eric DelwartBlood Systems Research Institute, San Francisco, CA, USA. delwarte@medicine.ucsf.edu
Elizabeth Slikas
Susan L Stramer
Hany Kamel
Debra Kessler
David Krysztof
Leslie H Tobler
Danielle M Carrick
Whitney Steele
Deborah Todd
David J Wright
Steven H Kleinman
Michael P Busch
NHLBI-REDS-II Study Group
Westat (United States) · USAmerican Red Cross · USBlood Systems Research Institute · USUniversity of California, San Francisco · USNew York Blood Center · USVitalant · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
REDS-II Central Laboratory-268047175-268047175N01HB047175 · HB · WESTAT. INC. · PI BUSCH, MICHAEL PAUL · 2005 to 2006
–
NHLBI NIH HHS N01 HB047168NHLBI NIH HHS N01-HB-47168NHLBI NIH HHS N01-HB-47169NHLBI NIH HHS N01-HB-47170NHLBI NIH HHS N01-HB-47171NHLBI NIH HHS N01-HB-47172NHLBI NIH HHS N01-HB-47174NHLBI NIH HHS N01-HB-47175NHLBI NIH HHS N01-HB-57181NIAID NIH HHS P30 AI027763
6 · The paper itself

Abstract

backgroundGenetic variations of human immunodeficiency virus (HIV), hepatitis C virus (HCV), and hepatitis B virus (HBV) can affect diagnostic assays and therapeutic interventions. Recent changes in prevalence of subtypes/genotypes and drug/immune-escape variants were characterized by comparing recently infected vs more remotely infected blood donors.

methodsInfected donors were identified among approximately 34 million US blood donations, 2006-2009; incident infections were defined as having no or low antiviral antibody titers. Viral genomes were partially sequenced.

resultsOf 321 HIV strains (50% incident), 2.5% were non-B HIV subtypes. Protease and reverse transcriptase (RT) inhibitor resistance mutations were found in 2% and 11% of infected donors, respectively. Subtypes in 278 HCV strains (31% incident) yielded 1a>1b>3a>2b>2a>4a>6d, 6e: higher frequencies of 3a in incident cases vs higher frequencies of 1b in prevalent cases were found (P = .04). Twenty subgenotypes among 193 HBV strains (26% incident) yielded higher frequencies of A2 in incident cases and higher frequencies of A1, B2, and B4 in prevalent cases (P = .007). No HBV drug resistance mutations were detected. Six percent of incident vs 26% of prevalent HBV contained antibody neutralization escape mutations (P = .01).

conclusionsViral genetic variant distribution in blood donors was similar to that seen in high-risk US populations. Blood-borne viruses detected through large-scale routine screening of blood donors can complement molecular surveillance studies of highly exposed populations.

Indexed as

Blood DonorsGenetic VariationGenome, ViralAdultAgedDrug Resistance, ViralFemaleHepacivirusHepatitis BHepatitis B virusHepatitis CHIVHIV InfectionsHumansMaleMiddle Aged

Identifiers

PMID22293432
PMCPMC3282564
OpenAlexW2098630777

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.