Evidence map›Paper›PMID 22290942›Full record

ArticleAntimicrobial agents and chemotherapy2012

Extending the definition of the GyrB quinolone resistance-determining region in Mycobacterium tuberculosis DNA gyrase for assessing fluoroquinolone resistance in M. tuberculosis.

Alix Pantel, Stéphanie Petrella, Nicolas Veziris, Florence Brossier, Sylvaine Bastian, Vincent Jarlier, Claudine Mayer, Alexandra Aubry

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 2 pooled it
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 2 syntheses or guidelines pooled it, 78 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  13. Genomic characterization of two metagenome-assembled genomes ofFrontiers in cellular and infection microbiology · 2022
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  14. Molecular Surveillance of Antimicrobial Resistance ofInfection and drug resistance · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 1 country.

Alix PantelUPMC Université Paris, Laboratoire de Bactériologie-Hygiène, Paris, France.
Stéphanie Petrella
Nicolas Veziris
Florence Brossier
Sylvaine Bastian
Vincent Jarlier
Claudine Mayer
Alexandra Aubry
CNR de la Résistance aux Antibiotiques · FRSorbonne Université · FRAssistance Publique – Hôpitaux de Paris · FRDélégation Paris 7 · FRPitié-Salpêtrière Hospital · FRUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fluoroquinolone (FQ) resistance is emerging in Mycobacterium tuberculosis. The main mechanism of FQ resistance is amino acid substitution within the quinolone resistance-determining region (QRDR) of the GyrA subunit of DNA gyrase, the sole FQ target in M. tuberculosis. However, substitutions in GyrB whose implication in FQ resistance is unknown are increasingly being reported. The present study clarified the role of four GyrB substitutions identified in M. tuberculosis clinical strains, two located in the QRDR (D500A and N538T) and two outside the QRDR (T539P and E540V), in FQ resistance. We measured FQ MICs and also DNA gyrase inhibition by FQs in order to unequivocally clarify the role of these mutations in FQ resistance. Wild-type GyrA, wild-type GyrB, and mutant GyrB subunits produced from engineered gyrB alleles by mutagenesis were overexpressed in Escherichia coli, purified to homogeneity, and used to reconstitute highly active gyrase complexes. MICs and DNA gyrase inhibition were determined for moxifloxacin, gatifloxacin, ofloxacin, levofloxacin, and enoxacin. All these substitutions are clearly implicated in FQ resistance, underlining the presence of a hot spot region housing most of the GyrB substitutions implicated in FQ resistance (residues NTE, 538 to 540). These findings help us to refine the definition of GyrB QRDR, which is extended to positions 500 to 540.

Indexed as

Anti-Bacterial AgentsDNA, BacterialDNA GyraseDNA, SuperhelicalDrug Resistance, BacterialFemaleFluoroquinolonesHumansLevofloxacinMaleMicrobial Sensitivity TestsModels, MolecularMutagenesisMycobacterium tuberculosisOfloxacinPlasmidsAnti-Bacterial AgentsDNA, BacterialDNA GyraseDNA, SuperhelicalFluoroquinolonesLevofloxacinOfloxacin

Identifiers

PMID22290942
PMCPMC3318379
OpenAlexW2091430469

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.