Evidence map›Paper›PMID 22290657›Full record

ArticleHuman mutation2012

Haploinsufficiency of SOX5 at 12p12.1 is associated with developmental delays with prominent language delay, behavior problems, and mild dysmorphic features.

Allen N Lamb, Jill A Rosenfeld, Nicholas J Neill, Michael E Talkowski, Ian Blumenthal, Santhosh Girirajan, Debra Keelean-Fuller, Zheng Fan, Jill Pouncey, Cathy Stevens and 33 more

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 103 citations in OpenAlex.

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  10. Review
  11. Review
  12. Article
  13. Drosophila kikkawai - Sox102F.microPublication biology · 2024
    Article
  14. Article
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors at 20 institutions in 3 countries.

Allen N LambSignature Genomic Laboratories, PerkinElmer, Inc., Spokane, Washington 99207, USA.
Jill A Rosenfeld
Nicholas J Neill
Michael E Talkowski
Ian Blumenthal
Santhosh Girirajan
Debra Keelean-Fuller
Zheng Fan
Jill Pouncey
Cathy Stevens
Loren Mackay-Loder
Deborah Terespolsky
Patricia I Bader
Kenneth Rosenbaum
Stephanie E Vallee
John B Moeschler
Roger Ladda
Susan Sell
Judith Martin
Shawnia Ryan
Marilyn C Jones
Rocio Moran
Amy Shealy
Suneeta Madan-Khetarpal
Juliann McConnell
Urvashi Surti
Andrée Delahaye
Bénédicte Heron-Longe
Eva Pipiras
Brigitte Benzacken
Sandrine Passemard
Alain Verloes
Bertrand Isidor
Cedric Le Caignec
Gwen M Glew
Kent E Opheim
Maria Descartes
Evan E Eichler
Cynthia C Morton
James F Gusella
Roger A Schultz
Blake C Ballif
Lisa G Shaffer
PerkinElmer (United States) · USAssistance Publique – Hôpitaux de Paris · FRCleveland Clinic · USCredit Valley Hospital · CADartmouth–Hitchcock Medical Center · USGénétique Médicale & Génomique Fonctionelle · FRPenn State Milton S. Hershey Medical Center · USSeattle Children's Hospital · USUniversity of North Carolina at Chapel Hill · USUniversity of Tennessee at Chattanooga · USBrigham and Women's Hospital · USBroad Institute · USCenter for Human Genetics · USChildren's Hospital of Pittsburgh · USChildren's National · USHôpital Jean-Verdier · FRHôpital Robert-Debré · FRHoward Hughes Medical Institute · USMassachusetts General Hospital · USParkview Health · US

Funding

RAPID GENE DISCOVERYP01GM061354 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI TALKOWSKI, MICHAEL E · 2001 to 2019
$24.3M
Complex Genetic Architecture of Chromosomal Aberrations in AutismR00MH095867 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI TALKOWSKI, MICHAEL E · 2014 to 2016
$747k
Genes disrupted by balanced genomic rearrangements in autism spectrum disordersR21HD065286 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI GUSELLA, JAMES F · 2009 to 2010
$617k
Rapid characterization of balanced genomic rearrangements contributing to AutismF32MH087123 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI TALKOWSKI, MICHAEL E · 2009 to 2012
$138k
Howard Hughes Medical InstituteNICHD NIH HHS HD065286NICHD NIH HHS R21 HD065286NIGMS NIH HHS GM061354NIGMS NIH HHS P01 GM061354NIMH NIH HHS F32 MH087123NIMH NIH HHS F32MH087123NIMH NIH HHS R00 MH095867
6 · The paper itself

Abstract

SOX5 encodes a transcription factor involved in the regulation of chondrogenesis and the development of the nervous system. Despite its important developmental roles, SOX5 disruption has yet to be associated with human disease. We report one individual with a reciprocal translocation breakpoint within SOX5, eight individuals with intragenic SOX5 deletions (four are apparently de novo and one inherited from an affected parent), and seven individuals with larger 12p12 deletions encompassing SOX5. Common features in these subjects include prominent speech delay, intellectual disability, behavior abnormalities, and dysmorphic features. The phenotypic impact of the deletions may depend on the location of the deletion and, consequently, which of the three major SOX5 protein isoforms are affected. One intragenic deletion, involving only untranslated exons, was present in a more mildly affected subject, was inherited from a healthy parent and grandparent, and is similar to a deletion found in a control cohort. Therefore, some intragenic SOX5 deletions may have minimal phenotypic effect. Based on the location of the deletions in the subjects compared to the controls, the de novo nature of most of these deletions, and the phenotypic similarities among cases, SOX5 appears to be a dosage-sensitive, developmentally important gene.

Indexed as

HaploinsufficiencyAdolescentAdultBody Dysmorphic DisordersCase-Control StudiesChildChild, PreschoolChromosomes, Human, Pair 12Developmental DisabilitiesFemaleHumansLanguage Development DisordersMaleMental DisordersSOXD Transcription FactorsSOX5 protein, humanSOXD Transcription Factors

Identifiers

PMID22290657
PMCPMC3618980
OpenAlexW2098036819

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.