Evidence map›Paper›PMID 22290143›Full record

ArticleInfection and immunity2012

Microevolution in fimH gene of mucosa-associated Escherichia coli strains isolated from pediatric patients with inflammatory bowel disease.

Valerio Iebba, Maria Pia Conte, Maria Stefania Lepanto, Giovanni Di Nardo, Floriana Santangelo, Marina Aloi, Valentina Totino, Monica Proietti Checchi, Catia Longhi, Salvatore Cucchiara and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Short-sighted evolution of virulence for invasive gut microbes: From hypothesis to tests.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Article
  7. Characterization of Adherent-InvasiveInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Why the discovery of adherent-invasiveWorld journal of biological chemistry · 2020
    Review
  13. Review
  14. Article
  15. Lactoferrin in Aseptic and Septic Inflammation.Molecules (Basel, Switzerland) · 2019
    Review
  16. Article
  17. Article
  18. Article
  19. Investigation of adherent-invasiveMedical journal of the Islamic Republic of Iran · 2018
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Valerio IebbaMicrobiology Unit, Department of Public Health Sciences, Sapienza University of Rome, Rome, Italy. valerio.iebba@uniroma1.it
Maria Pia Conte
Maria Stefania Lepanto
Giovanni Di Nardo
Floriana Santangelo
Marina Aloi
Valentina Totino
Monica Proietti Checchi
Catia Longhi
Salvatore Cucchiara
Serena Schippa
Sapienza University of Rome · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several studies reported increased numbers of mucosa-associated Escherichia coli strains in patients with inflammatory bowel disease (IBD), encompassing Crohn's disease (CD) and ulcerative colitis (UC). The majority of E. coli strains possess type 1 fimbriae, whose tip fibrillum protein, FimH, naturally undergoes amino acid replacements, an important process in the adaptation of commensal E. coli strains to environmental changes, like those observed in IBD and urinary tract infections. In this study, we analyzed mutational patterns in the fimH gene of 52 mucosa-associated E. coli strains isolated from IBD and non-IBD pediatric patients, in order to investigate microevolution of this genetic trait. FimH-positive strains were also phylogenetically typed and tested for their adhesive ability on Caco-2 cells. Specific FimH alleles for each grouping feature were found. Mutations G66S and V27A were related to CD, while mutations A242V, V163A, and T74I were attributed to UC. Otherwise, the G66S, N70S, and S78N mutations were specifically attributed to B2/D phylogroups. The N70S and A119V mutations were related to adhesive E. coli strains. Phylogroup B2, adhesive, and IBD E. coli strains showed a higher site substitution rate (SSR) in the fimH gene, together with a higher number of mutations. The degree of naïve mucosal inflammation was related to specific FimH alleles. Moreover, we could suggest that the V27A mutation is pathoadaptive for the CD intestinal habitat, while we could also suggest that both the N70S and S78N mutations are related to the more virulent E. coli B2 phylogroup. In conclusion, we found some FimH variants that seem to be more involved than others in the evolution of IBD pathogenesis.

Indexed as

Evolution, MolecularAdhesins, Escherichia coliAdolescentAmino Acid SequenceBacterial AdhesionBase SequenceCaco-2 CellsChildColitis, UlcerativeCrohn DiseaseEscherichia coliEscherichia coli InfectionsFemaleFimbriae, BacterialFimbriae ProteinsHumansAdhesins, Escherichia coliFimbriae ProteinsfimH protein, E coli

Identifiers

PMID22290143
PMCPMC3318419
OpenAlexW2149560588

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.