Evidence map›Paper›PMID 22286982›Full record

ArticleApplied and environmental microbiology2012

Supplementation of intracellular XylR leads to coutilization of hemicellulose sugars.

Dan Groff, Peter I Benke, Tanveer S Batth, Gregory Bokinsky, Christopher J Petzold, Paul D Adams, Jay D Keasling

Abstract readEvaluation Study
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Biotechnology for biofuels · 2017
    Article
  8. Review
  9. Article
  10. Next generation biofuel engineering in prokaryotes.Current opinion in chemical biology · 2013
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dan GroffJoint BioEnergy Institute, Emeryville, California, USA.
Peter I Benke
Tanveer S Batth
Gregory Bokinsky
Christopher J Petzold
Paul D Adams
Jay D Keasling

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Escherichia coli has the potential to be a powerful biocatalyst for the conversion of lignocellulosic biomass into useful materials such as biofuels and polymers. One important challenge in using E. coli for the transformation of biomass sugars is diauxie, or sequential utilization of different types of sugars. We demonstrate that, by increasing the intracellular levels of the transcription factor XylR, the preferential consumption of arabinose before xylose can be eliminated. In addition, XylR augmentation must be finely tuned for robust coutilization of these two hemicellulosic sugars. Using a novel technique for scarless gene insertion, an additional copy of xylR was inserted into the araBAD operon. The resulting strain was superior at cometabolizing mixtures of arabinose and xylose and was able to produce at least 36% more ethanol than wild-type strains. This strain is a useful starting point for the development of an E. coli biocatalyst that can simultaneously convert all biomass sugars.

Indexed as

ArabinoseBiofuelsBiotechnologyCulture MediaEscherichia coliEscherichia coli ProteinsEthanolFermentationGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicPolysaccharidesTranscription FactorsXyloseArabinoseBiofuelsCulture MediaEscherichia coli ProteinsEthanolhemicellulosePolysaccharidesTranscription FactorsXylose

Identifiers

PMID22286982
PMCPMC3302627

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.