Evidence map›Paper›PMID 22286099›Full record

ArticleNature cell biology2012

The LIMD1 protein bridges an association between the prolyl hydroxylases and VHL to repress HIF-1 activity.

Daniel E Foxler, Katherine S Bridge, Victoria James, Thomas M Webb, Maureen Mee, Sybil C K Wong, Yunfeng Feng, Dumitru Constantin-Teodosiu, Thorgunnur Eyfjord Petursdottir, Johannes Bjornsson and 4 more

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In one paragraph

Article in Nature cell biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 1 synthesis or guideline pooled it, 97 citations in OpenAlex.

  1. Pooled it
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  8. Review
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  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
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  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

Daniel E FoxlerSchool of Biomedical Sciences, University of Nottingham, Queen's Medical Centre, NG7 2UH, UK.
Katherine S Bridge
Victoria James
Thomas M Webb
Maureen Mee
Sybil C K Wong
Yunfeng Feng
Dumitru Constantin-Teodosiu
Thorgunnur Eyfjord Petursdottir
Johannes Bjornsson
Sigurdur Ingvarsson
Peter J Ratcliffe
Gregory D Longmore
Tyson V Sharp
Queen's Medical Centre · GBNational University Hospital of Iceland · ISUniversity of Nottingham · GBBioPharm (United Kingdom) · GBQueen Mary University of London · GBUniversity of Iceland · ISUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F006470/1Biotechnology and Biological Sciences Research Council BB/I007571/1Cancer Research UK 12733
6 · The paper itself

Abstract

There are three prolyl hydroxylases (PHD1, 2 and 3) that regulate the hypoxia-inducible factors (HIFs), the master transcriptional regulators that respond to changes in intracellular O(2) tension. In high O(2) tension (normoxia) the PHDs hydroxylate two conserved proline residues on HIF-1α, which leads to binding of the von Hippel-Lindau (VHL) tumour suppressor, the recognition component of a ubiquitin-ligase complex, initiating HIF-1α ubiquitylation and degradation. However, it is not known whether PHDs and VHL act separately to exert their enzymatic activities on HIF-1α or as a multiprotein complex. Here we show that the tumour suppressor protein LIMD1 (LIM domain-containing protein) acts as a molecular scaffold, simultaneously binding the PHDs and VHL, thereby assembling a PHD-LIMD1-VHL protein complex and creating an enzymatic niche that enables efficient degradation of HIF-1α. Depletion of endogenous LIMD1 increases HIF-1α levels and transcriptional activity in both normoxia and hypoxia. Conversely, LIMD1 expression downregulates HIF-1 transcriptional activity in a manner depending on PHD and 26S proteasome activities. LIMD1 family member proteins Ajuba and WTIP also bind to VHL and PHDs 1 and 3, indicating that these LIM domain-containing proteins represent a previously unrecognized group of hypoxic regulators.

Indexed as

Cell HypoxiaCell Line, TumorHEK293 CellsHeLa CellsHumansHydroxylationHypoxia-Inducible Factor 1, alpha SubunitHypoxia-Inducible Factor-Proline DioxygenasesImmunoblottingImmunoprecipitationIntracellular Signaling Peptides and ProteinsLIM Domain ProteinsModels, BiologicalPolyubiquitinProcollagen-Proline DioxygenaseProteasome Endopeptidase ComplexATP dependent 26S proteaseEGLN1 protein, humanHypoxia-Inducible Factor 1, alpha SubunitHypoxia-Inducible Factor-Proline DioxygenasesIntracellular Signaling Peptides and ProteinsLIMD1 protein, humanLIM Domain ProteinsPolyubiquitinProcollagen-Proline DioxygenaseProteasome Endopeptidase ComplexVon Hippel-Lindau Tumor Suppressor Protein

Identifiers

PMID22286099
OpenAlexW1991674420

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.