ArticleBioinformatics (Oxford, England)2012
Chado controller: advanced annotation management with a community annotation system.
Article in Bioinformatics (Oxford, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
What it found
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Who cites it
8 citing papers in PubMed.
- Three founding ancestral genomes involved in the origin of sugarcane.Annals of botany · 2021Article
- Analysis of Three Sugarcane Homo/Homeologous Regions Suggests Independent Polyploidization Events of Saccharum officinarum and Saccharum spontaneum.Genome biology and evolution · 2017Article
- MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data.Database : the journal of biological databases and curation · 2017Article
- InsectBase: a resource for insect genomes and transcriptomes.Nucleic acids research · 2016Article
- The coffee genome hub: a resource for coffee genomes.Nucleic acids research · 2015Article
- Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots.Plant molecular biology · 2014Article
- The banana genome hub.Database : the journal of biological databases and curation · 2013Article
- ORCAE: online resource for community annotation of eukaryotes.Nature methods · 2012Article
Corrections and comments
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
summaryWe developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional annotation controls) and stores versions of annotation for all modified features. The Chado controller uses PostgreSQL and Perl. AVAILABILITY: The Chado Controller package is available for download at http://www.gnpannot.org/content/chado-controller and runs on any Unix-like operating system, and documentation is available at http://www.gnpannot.org/content/chado-controller-doc The system can be tested using the GNPAnnot Sandbox at http://www.gnpannot.org/content/gnpannot-sandbox-form CONTACT: valentin.guignon@cirad.fr; stephanie.sidibe-bocs@cirad.fr SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.