Evidence map›Paper›PMID 22283706›Full record

ArticleAnalytical chemistry2012

Fiducial markers for combined 3-dimensional mass spectrometric and optical tissue imaging.

Kamila Chughtai, Lu Jiang, Tiffany R Greenwood, Ivo Klinkert, Erika R Amstalden van Hove, Ron M A Heeren, Kristine Glunde

Abstract read
In one paragraph

Article in Analytical chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Mass spectrometric imaging of red fluorescent protein in breast tumor xenografts.Journal of the American Society for Mass Spectrometry · 2013
    Article
  10. High energy collisions on tandem time-of-flight mass spectrometers.Journal of the American Society for Mass Spectrometry · 2013
    Article
  11. Review
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kamila ChughtaiFOM Institute AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands.
Lu Jiang
Tiffany R Greenwood
Ivo Klinkert
Erika R Amstalden van Hove
Ron M A Heeren
Kristine Glunde

Funding

Multi-scale Molecular Imaging of the Degradome in Breast TumorsR01CA154725 · NCI · JOHNS HOPKINS UNIVERSITY · PI GLUNDE, KRISTINE · 2011 to 2015
$1.7M
Imaging hypoxia-driven signaling pathways in the breast tumor microenvironmentR01CA134695 · NCI · JOHNS HOPKINS UNIVERSITY · PI GLUNDE, KRISTINE · 2008 to 2012
$1.5M
Request for Zeiss LSM 510 MP Multiphoton Imaging SystemS10RR024550 · NCRR · JOHNS HOPKINS UNIVERSITY · PI KUO, SCOT CHARLES · 2008 to 2008
$500k
NCI NIH HHS R01 CA134695NCI NIH HHS R01 CA154725NCRR NIH HHS S10 RR024550
6 · The paper itself

Abstract

Mass spectrometric imaging (MSI) has become widely used in the analysis of a variety of biological surfaces. Biological samples are spatially, morphologically, and metabolically complex. Multimodal molecular imaging is an emerging approach that is capable of dealing with this complexity. In a multimodal approach, different imaging modalities can provide precise information about the local molecular composition of the surfaces. Images obtained by MSI can be coregistered with images obtained by other molecular imaging techniques such as microscopic images of fluorescent protein expression or histologically stained sections. In order to properly coregister images from different modalities, each tissue section must contain points of reference, which are visible in all data sets. Here, we report a newly developed coregistration technique using fiducial markers such as cresyl violet, Ponceau S, and bromophenol blue that possess a combination of optical and molecular properties that result in a clear mass spectrometric signature. We describe these fiducial markers and demonstrate an application that allows accurate coregistration and 3-dimensional reconstruction of serial histological and fluorescent microscopic images with MSI images of thin tissue sections from a breast tumor model.

Indexed as

Imaging, Three-DimensionalMass SpectrometryTomography, X-Ray ComputedAnimalsAzo CompoundsBenzoxazinesBiomarkers, TumorBreast NeoplasmsBromphenol BlueFemaleHumansImage Interpretation, Computer-AssistedImage Processing, Computer-AssistedMiceOxazinesTransplantation, HeterologousAzo CompoundsBenzoxazinesBiomarkers, TumorBromphenol Bluecresyl violetOxazinesponceau S

Identifiers

PMID22283706
PMCPMC3302962

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.