Evidence map›Paper›PMID 22282472›Full record

ArticleScience (New York, N.Y.)2012

Evolutionarily assembled cis-regulatory module at a human ciliopathy locus.

Jeong Ho Lee, Jennifer L Silhavy, Ji Eun Lee, Lihadh Al-Gazali, Sophie Thomas, Erica E Davis, Stephanie L Bielas, Kiley J Hill, Miriam Iannicelli, Francesco Brancati and 20 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. The Joubert-Meckel-Nephronophthisis Spectrum of Ciliopathies.Annual review of genomics and human genetics · 2022
    Review
  11. Review
  12. Article
  13. Tmem138 is localized to the connecting cilium essential for rhodopsin localization and outer segment biogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Genotype-phenotype correlates in Joubert syndrome: A review.American journal of medical genetics. Part C, Seminars in medical genetics · 2022
    Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 10 institutions in 4 countries.

Jeong Ho LeeNeurogenetics Laboratory, Howard Hughes Medical Institute (HHMI), Department of Neurosciences, University of California, San Diego, CA, USA.
Jennifer L Silhavy
Ji Eun Lee
Lihadh Al-Gazali
Sophie Thomas
Erica E Davis
Stephanie L Bielas
Kiley J Hill
Miriam Iannicelli
Francesco Brancati
Stacey B Gabriel
Carsten Russ
Clare V Logan
Saghira Malik Sharif
Christopher P Bennett
Masumi Abe
Friedhelm Hildebrandt
Bill H Diplas
Tania Attié-Bitach
Nicholas Katsanis
Anna Rajab
Roshan Koul
Laszlo Sztriha
Elizabeth R Waters
Susan Ferro-Novick
C Geoffrey Woods
Colin A Johnson
Enza Maria Valente
Maha S Zaki
Joseph G Gleeson
Duke Medical Center · USBroad Institute · USInserm · FRJohns Hopkins Medicine · USMassachusetts Institute of Technology · USMinistry of Health · OMSan Diego State University · USSt James's University Hospital · GBSultan Qaboos University Hospital · OMUniversité Paris Cité · FR

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
U of Calif, San Diego Neuroscience Microscopy ImagingP30NS047101 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G, ZHENG, BINHAI · 2003 to 2022
$9.0M
Molecular Genetics of BBSR01HD042601 · NICHD · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2003 to 2023
$8.2M
Genetic and Functional Studies of Human Ciliary SyndromesR01DK072301 · NIDDK · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2005 to 2022
$7.2M
Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
Medical Scientist Training Program Training GrantT32GM145449 · NIGMS · DUKE UNIVERSITY · PI Christopher D Kontos · 2022 to 2026
$6.6M
Molecular Characterization of Joubert SyndromeR01NS048453 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G · 2004 to 2020
$6.0M
The Role of Basa Bodies in Wnt SignalingR01DK075972 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI KATSANIS, NICHOLAS · 2007 to 2015
$3.1M
Jouberin and Nephrocystin in Joubert SyndromeR01NS052455 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G · 2007 to 2015
$3.0M
Modifiers of Retinal Phenotypes in CiliopathiesR01EY021872 · NEI · DUKE UNIVERSITY · PI DAVIS, ERICA ELLEN · 2011 to 2015
$1.9M
Identifying all Meckel-like ciliopathy genes by established total exome capture aRC4DK090917 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OTTO, EDGAR A · 2010 to 2010
$1.2M
Howard Hughes Medical InstituteMedical Research Council G0700073NCI NIH HHS P30 CA023100NEI NIH HHS EY021872NEI NIH HHS R01 EY021872NHGRI NIH HHS U54 HG003067NICHD NIH HHS HD042601NICHD NIH HHS R01 HD042601NIDDK NIH HHS DK068306NIDDK NIH HHS DK072301NIDDK NIH HHS DK075972NIDDK NIH HHS DK090917NIDDK NIH HHS R01 DK068306NIDDK NIH HHS R01 DK072301NIDDK NIH HHS R01 DK075972NIDDK NIH HHS RC4 DK090917NIGMS NIH HHS T32 GM145449NINDS NIH HHS NS04843NINDS NIH HHS NS052455NINDS NIH HHS P30 NS047101NINDS NIH HHS P30NS047101NINDS NIH HHS R01 NS048453NINDS NIH HHS R01 NS052455Telethon GGP08145
6 · The paper itself

Abstract

Neighboring genes are often coordinately expressed within cis-regulatory modules, but evidence that nonparalogous genes share functions in mammals is lacking. Here, we report that mutation of either TMEM138 or TMEM216 causes a phenotypically indistinguishable human ciliopathy, Joubert syndrome. Despite a lack of sequence homology, the genes are aligned in a head-to-tail configuration and joined by chromosomal rearrangement at the amphibian-to-reptile evolutionary transition. Expression of the two genes is mediated by a conserved regulatory element in the noncoding intergenic region. Coordinated expression is important for their interdependent cellular role in vesicular transport to primary cilia. Hence, during vertebrate evolution of genes involved in ciliogenesis, nonparalogous genes were arranged to a functional gene cluster with shared regulatory elements.

Indexed as

Evolution, MolecularGene Expression RegulationGenetic LociRegulatory Sequences, Nucleic AcidAmino Acid SequenceAnimalsCell LineCerebellar DiseasesCiliaConserved SequenceDNA, IntergenicEye AbnormalitiesGene Expression ProfilingGenetic HeterogeneityHumansKidney Diseases, CysticDNA, IntergenicMembrane ProteinsTMEM138 protein, humanTMEM216 protein, human

Identifiers

PMID22282472
PMCPMC3671610
OpenAlexW2083982327

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.