Evidence map›Paper›PMID 22281825›Full record

ArticleInvestigative ophthalmology & visual science2012

Thy1 associates with the cation channel subunit HCN4 in adult rat retina.

Gloria J Partida, Tyler W Stradleigh, Genki Ogata, Iv Godzdanker, Andrew T Ishida

Open access · greenAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Review
  3. Thy-1/CD90 a Bidirectional and Lateral Signaling Scaffold.Frontiers in cell and developmental biology · 2019
    Review
  4. HCN Channels Modulators: The Need for Selectivity.Current topics in medicinal chemistry · 2016
    Review
  5. Fixation strategies for retinal immunohistochemistry.Progress in retinal and eye research · 2015
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Gloria J PartidaSection of Neurobiology, Physiology, and Behavior, University ofCalifornia, Davis, California 95616-8519, USA.
Tyler W Stradleigh
Genki Ogata
Iv Godzdanker
Andrew T Ishida
University of California, Davis · US

Funding

VISION RESEARCH CORE GRANTP30EY012576 · NEI · UNIVERSITY OF CALIFORNIA DAVIS · PI LISA M OAKES · 1999 to 2026
$18.9M
PHARMACOLOGY &PHYSIOLOGY OF RETINAL GANGLION CELLSR01EY008120 · NEI · UNIVERSITY OF CALIFORNIA DAVIS · PI ISHIDA, ANDREW T · 1995 to 2017
$6.7M
Vision Science Training Program: Cornea to CortexT32EY015387 · NEI · UNIVERSITY OF CALIFORNIA DAVIS · PI MARIE E BURNS · 2003 to 2026
$4.8M
PHARMACOLOGY AND PHYSIOLOGY OF RETINAL GANGLION CELLSR29EY008120 · NEI · UNIVERSITY OF CALIFORNIA DAVIS · PI ISHIDA, ANDREW T · 1989 to 1993
–
NEI NIH HHS EY08120NEI NIH HHS EY08120-17S1NEI NIH HHS EY08120-20S1NEI NIH HHS P30 EY012576NEI NIH HHS P30 EY12576NEI NIH HHS R01 EY008120NEI NIH HHS T32 EY015387PHS HHS R25 56765
6 · The paper itself

Abstract

purposeThe membrane expression and gene promoter of the glycosylphosphatidylinositol (GPI)-anchored protein Thy1 have been widely used to examine the morphology and distribution of retinal ganglion cells in normal eyes and disease models. However, it is not known how adult mammalian retinal neurons use Thy1. Because Thy1 is not a membrane-spanning protein and, instead, complexes with structural and signaling proteins in other tissues, the aim of this study was to find protein partners of retinal Thy1.

methodsCoimmunoprecipitation, immunohistochemistry, confocal imaging, and patch-clamp recording were used to test for association of Thy1 and HCN4, a cation channel subunit, in adult rat retina.

resultsHyperpolarization of cells immunopanned by an anti-Thy1 antibody activated HCN channels. Confocal imaging showed that individual somata in the ganglion cell layer bound antibodies against Thy1 and HCN4, that the majority of these bindings colocalized, and that some of the immunopositive cells also bound antibody against a ganglion cell marker (Brn3a). Consistent with these results, Thy1 and HCN4 were coimmunoprecipitated by magnetic beads coated with either anti-Thy1 antibody or anti-HCN4 antibody. In control experiments, beads coated with these antibodies did not immunoprecipitate a photoreceptor rim protein (ABCR) and uncoated beads did not immunoprecipitate either Thy1 or HCN4.

conclusionsThis is the first report that Thy1 colocalizes and coimmunoprecipitates with a membrane-spanning protein in retina, that Thy1 complexes with an ion channel protein in any tissue, and that a GPI-anchored protein associates with an HCN channel subunit protein.

Indexed as

AnimalsFemaleHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsImmunoprecipitationPatch-Clamp TechniquesPotassium ChannelsRatsRats, Long-EvansRetinal Ganglion CellsThy-1 AntigensHCN4 protein, ratHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsPotassium ChannelsThy-1 Antigens

Identifiers

PMID22281825
PMCPMC3339924
OpenAlexW1968750676

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.