Evidence map›Paper›PMID 22280019›Full record

ArticleJournal of the American Chemical Society2012

Quasiracemic crystallization as a tool to assess the accommodation of noncanonical residues in nativelike protein conformations.

David E Mortenson, Kenneth A Satyshur, Ilia A Guzei, Katrina T Forest, Samuel H Gellman

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. D-Peptide and D-Protein Technology: Recent Advances, Challenges, and Opportunities.Chembiochem : a European journal of chemical biology · 2023
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. High-resolution structures of a heterochiral coiled coil.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

David E MortensonDepartment of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.
Kenneth A Satyshur
Ilia A Guzei
Katrina T Forest
Samuel H Gellman

Funding

Use of designed peptides to study folding and bindingR01GM061238 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI GELLMAN, SAMUEL H. · 2000 to 2023
$7.9M
PREDOCTORAL TRAINING IN MOLECULAR BIOPHYSICST32GM008293 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI JACKSON, MEYER B. · 1989 to 2016
$4.6M
TYPE IV PILI: STRUCTURAL ASPECTS OF THE ASSEMBLY MECHANIR01GM059721 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOREST, KATRINA T · 2000 to 2011
$2.3M
Functional analysis of the MbtH-like protein superfamilyR01GM100346 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOREST, KATRINA T, THOMAS, MICHAEL GEORGE · 2013 to 2016
$1.1M
DIRECT NEUROTOXICITY OF LOCAL ANESTHETICSR01GM059271 · NIGMS · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI JOHNSON, MICHAEL E · 2000 to 2002
$593k
NIGMS NIH HHS GM061238NIGMS NIH HHS GM59271NIGMS NIH HHS R01 GM059271NIGMS NIH HHS R01 GM059721NIGMS NIH HHS R01 GM061238NIGMS NIH HHS R01 GM100346NIGMS NIH HHS T32 GM008293NIGMS NIH HHS T32 GM08293
6 · The paper itself

Abstract

Quasiracemic crystallization has been used to obtain high-resolution structures of two variants of the villin headpiece subdomain (VHP) that contain a pentafluorophenylalanine (F(5)Phe) residue in the hydrophobic core. In each case, the crystal contained the variant constructed from l-amino acids and the native sequence constructed from d-amino acids. We were motivated to undertake these studies by reports that racemic proteins crystallize more readily than homochiral forms and the prospect that quasiracemic crystallization would enable us to determine whether a polypeptide containing a noncanonical residue can closely mimic the tertiary structure of the native sequence. The results suggest that quasiracemic crystallization may prove to be generally useful for assessing mimicry of naturally evolved protein folding patterns by polypeptides that contain unnatural side-chain or backbone subunits.

Indexed as

CrystallizationMicrofilament ProteinsModels, MolecularPhenylalanineProtein ConformationMicrofilament ProteinsPhenylalaninevillin

Identifiers

PMID22280019
PMCPMC3351109

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.