Evidence map›Paper›PMID 22279548›Full record

ArticlePloS one2012

Genetic signatures of exceptional longevity in humans.

Paola Sebastiani, Nadia Solovieff, Andrew T Dewan, Kyle M Walsh, Annibale Puca, Stephen W Hartley, Efthymia Melista, Stacy Andersen, Daniel A Dworkis, Jemma B Wilk and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 220 papers, 9 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
220citing papers in PubMed, 9 pooled it
15.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

220 citing papers in PubMed, 9 syntheses or guidelines pooled it, 461 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. APOE Alleles and Extreme Human Longevity.The journals of gerontology. Series A, Biological sciences and medical sciences · 2019
    Pooled it
  4. Effects of FOXO3 Polymorphisms on Survival to Extreme Longevity in Four Centenarian Studies.The journals of gerontology. Series A, Biological sciences and medical sciences · 2018
    Pooled it
  5. Limitations and risks of meta-analyses of longevity studies.Mechanisms of ageing and development · 2017
    Pooled it
  6. Pooled it
  7. GWAS of longevity in CHARGE consortium confirms APOE and FOXO3 candidacy.The journals of gerontology. Series A, Biological sciences and medical sciences · 2015
    Pooled it
  8. Pooled it
  9. Pooled it
  10. Trial
  11. Trial
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

160 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Paola SebastianiDepartment of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, United States of America. sebas@bu.edu
Nadia Solovieff
Andrew T Dewan
Kyle M Walsh
Annibale Puca
Stephen W Hartley
Efthymia Melista
Stacy Andersen
Daniel A Dworkis
Jemma B Wilk
Richard H Myers
Martin H Steinberg
Monty Montano
Clinton T Baldwin
Josephine Hoh
Thomas T Perls
Boston University · USYale University · USBoston Medical Center · USIstituti di Ricovero e Cura a Carattere Scientifico · IT

Funding

Systems BiologyU19AG023122 · NIA · TRANSLATIONAL GENOMICS RESEARCH INST · PI NICHOLAS Joseph SCHORK · 2004 to 2026
$102.6M
Genome-Wide Association Studies in Sickle Cell Anemia and in CentenariansR01HL087681 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI STEINBERG, MARTIN H. · 2007 to 2010
$6.0M
GENETIC LINKAGE STUDY IN PARKINSONS DISEASER01NS036711 · NINDS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MYERS, RICHARD H · 1997 to 2006
$4.2M
Macrophage-Muscle Precursor Cell Interaction in the Context of HIV InfectionR01AR055115 · NIAMS · BOSTON MEDICAL CENTER · PI MONTANO, MONTY A · 2007 to 2011
$1.8M
GENETIC FACTORS CAUSING LONGEVITY IN CENTENARIANS AND THEIR OFFSPRINGR01AG027216 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI BALDWIN, CLINTON T · 2006 to 2008
$974k
Characterizing Human Exceptional LongevityK24AG025727 · NIA · BOSTON MEDICAL CENTER · PI PERLS, THOMAS T · 2006 to 2010
$789k
NHLBI NIH HHS R01 HL087681NIAMS NIH HHS R01 AR055115NIA NIH HHS K24 AG025727NIA NIH HHS R01 AG027216NIA NIH HHS U19 AG023122NINDS NIH HHS R01 NS036711NINDS NIH HHS R01 NS36711-09
6 · The paper itself

Abstract

Like most complex phenotypes, exceptional longevity is thought to reflect a combined influence of environmental (e.g., lifestyle choices, where we live) and genetic factors. To explore the genetic contribution, we undertook a genome-wide association study of exceptional longevity in 801 centenarians (median age at death 104 years) and 914 genetically matched healthy controls. Using these data, we built a genetic model that includes 281 single nucleotide polymorphisms (SNPs) and discriminated between cases and controls of the discovery set with 89% sensitivity and specificity, and with 58% specificity and 60% sensitivity in an independent cohort of 341 controls and 253 genetically matched nonagenarians and centenarians (median age 100 years). Consistent with the hypothesis that the genetic contribution is largest with the oldest ages, the sensitivity of the model increased in the independent cohort with older and older ages (71% to classify subjects with an age at death>102 and 85% to classify subjects with an age at death>105). For further validation, we applied the model to an additional, unmatched 60 centenarians (median age 107 years) resulting in 78% sensitivity, and 2863 unmatched controls with 61% specificity. The 281 SNPs include the SNP rs2075650 in TOMM40/APOE that reached irrefutable genome wide significance (posterior probability of association = 1) and replicated in the independent cohort. Removal of this SNP from the model reduced the accuracy by only 1%. Further in-silico analysis suggests that 90% of centenarians can be grouped into clusters characterized by different "genetic signatures" of varying predictive values for exceptional longevity. The correlation between 3 signatures and 3 different life spans was replicated in the combined replication sets. The different signatures may help dissect this complex phenotype into sub-phenotypes of exceptional longevity.

Indexed as

Polymorphism, Single NucleotideAgedAged, 80 and overAgingAllelesBayes TheoremCohort StudiesFemaleGene FrequencyGenetic Predisposition to DiseaseGenome, HumanGenotypeHumansLongevityMaleModels, Genetic

Identifiers

PMID22279548
PMCPMC3261167
OpenAlexW2053900484

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.