Evidence map›Paper›PMID 22279106›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2012

A developmentally controlled competitive STAT5-PU.1 DNA binding mechanism regulates activity of the Ig κ E3' enhancer.

Suchita Hodawadekar, Kyoungsook Park, Michael A Farrar, Michael L Atchison

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Suchita HodawadekarDepartment of Animal Biology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Kyoungsook Park
Michael A Farrar
Michael L Atchison
University of Pennsylvania · USSamsung Medical Center · KRUniversity of Minnesota · US

Funding

Control of B cell Development by YY1R01AI079002 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL LEE · 2010 to 2020
$4.3M
Pre-BCR and STAT5 Signaling in Acute Lymphoblastic LeukemiaR01CA151845 · NCI · UNIVERSITY OF MINNESOTA · PI FARRAR, MICHAEL ARCHIBALD · 2011 to 2015
$1.5M
PcG Function of YY1 in Transcription and DevelopmentR01GM071830 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL LEE · 2006 to 2010
$1.3M
Developmental Control of Enhancer FunctionR01GM082841 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL LEE · 2010 to 2013
$1.2M
NCI NIH HHS R01 CA151845NIAID NIH HHS R01 AI079002NIGMS NIH HHS GM071820NIGMS NIH HHS GM082841NIGMS NIH HHS R01 GM071830NIGMS NIH HHS R01 GM082841
6 · The paper itself

Abstract

Stage-specific rearrangement of Ig H and L chain genes poses an enigma because both processes use the same recombinatorial machinery, but the H chain locus is accessible at the pro-B cell stage, whereas the L chain loci become accessible at the pre-B cell stage. Transcription factor STAT5 is a positive-acting factor for rearrangement of distal V(H) genes, but attenuation of IL-7 signaling and loss of activated STAT5 at the pre-B cell stage corresponds with Igκ locus accessibility and rearrangement, suggesting that STAT5 plays an inhibitory role at this locus. Indeed, loss of IL-7 signaling correlates with increased activity at the Igκ intron enhancer. However, the κE3' enhancer must also be regulated as this enhancer plays a role in Igκ rearrangement. We show in this study that STAT5 can repress κE3' enhancer activity. We find that STAT5 binds to a site that overlaps the κE3' PU.1 binding site. We observed reciprocal binding by STAT5 and PU.1 to the κE3' enhancer in primary bone marrow cells, STAT5 and PU.1 retrovirally transduced pro-B cell lines, or embryonic stem cells induced to differentiate into B lineage cells. Binding by STAT5 corresponded with low occupancy of other enhancer binding proteins, whereas PU.1 binding corresponded with recruitment of IRF4 and E2A to the κE3' enhancer. We also find that IRF4 expression can override the repressive activity of STAT5. We propose a novel PU.1/STAT5 displacement model during B cell development, and this, coupled with increased IRF4 and E2A activity, regulates κE3' enhancer function.

Indexed as

AnimalsBinding, CompetitiveB-Lymphocyte SubsetsCell DifferentiationCell Line, TumorCells, CulturedCoculture TechniquesDNA-Binding ProteinsEnhancer Elements, GeneticImmunoglobulin kappa-ChainsMiceMice, Inbred C57BLMice, TransgenicModels, MolecularNIH 3T3 CellsProtein BindingDNA-Binding ProteinsImmunoglobulin kappa-ChainsProto-Oncogene ProteinsProto-Oncogene Protein Spi-1STAT5 Transcription FactorTrans-Activators

Identifiers

PMID22279106
PMCPMC3288515
OpenAlexW2158574715

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.