Evidence map›Paper›PMID 22277967›Full record

ArticleScience translational medicine2012

Molecular diagnosis of infantile mitochondrial disease with targeted next-generation sequencing.

Sarah E Calvo, Alison G Compton, Steven G Hershman, Sze Chern Lim, Daniel S Lieber, Elena J Tucker, Adrienne Laskowski, Caterina Garone, Shangtao Liu, David B Jaffe and 7 more

Abstract read
In one paragraph

Article in Science translational medicine, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 238 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
238citing papers in PubMed, 2 pooled it
23.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

238 citing papers in PubMed, 2 syntheses or guidelines pooled it, 472 citations in OpenAlex.

  1. Pooled it
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  8. Mitochondrial tRNAHuman mutation · 2026
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178 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 10 institutions in 3 countries.

Sarah E CalvoCenter for Human Genetic Research and Department of Molecular Biology, Massachusetts General Hospital, 185 Cambridge Street, Sixth Floor, Boston, MA 02114, USA.
Alison G Compton
Steven G Hershman
Sze Chern Lim
Daniel S Lieber
Elena J Tucker
Adrienne Laskowski
Caterina Garone
Shangtao Liu
David B Jaffe
John Christodoulou
Janice M Fletcher
Damien L Bruno
Jack Goldblatt
Salvatore Dimauro
David R Thorburn
Vamsi K Mootha
Broad Institute · USMurdoch Children's Research Institute · AURoyal Children's Hospital · AUCenter for Systems Biology · USColumbia University · USMassachusetts Institute of Technology · USUniversity of Adelaide · AUUniversity of Bologna · ITUniversity of Melbourne · AUVictorian Clinical Genetics Services · AU

Funding

THERAPEUTIC APPROACHES IN MODELS OF MITOCHONDRIAL DIS.P01HD032062 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DIMAURO, SALVATORE · 1995 to 2014
$24.4M
Whole-genome shotgun sequencing strategy and assemblyR01HG003474 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI JAFFE, DAVID B · 2005 to 2013
$6.1M
Characterization of the Mitochondrial ProteomeR01GM077465 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI MOOTHA, VAMSI KRISHNA · 2007 to 2016
$4.3M
Human Mitochondrial Disease: From Novel Gene Variants to Causality and FunctionR01GM097136 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI MOOTHA, VAMSI KRISHNA · 2011 to 2014
$2.0M
NHGRI NIH HHS R01 HG003474NICHD NIH HHS HD32062NICHD NIH HHS P01 HD032062NIGMS NIH HHS 1R01GM097136NIGMS NIH HHS R01 GM077465NIGMS NIH HHS R01GM077465NIGMS NIH HHS R01 GM097136
6 · The paper itself

Abstract

Advances in next-generation sequencing (NGS) promise to facilitate diagnosis of inherited disorders. Although in research settings NGS has pinpointed causal alleles using segregation in large families, the key challenge for clinical diagnosis is application to single individuals. To explore its diagnostic use, we performed targeted NGS in 42 unrelated infants with clinical and biochemical evidence of mitochondrial oxidative phosphorylation disease. These devastating mitochondrial disorders are characterized by phenotypic and genetic heterogeneity, with more than 100 causal genes identified to date. We performed "MitoExome" sequencing of the mitochondrial DNA (mtDNA) and exons of ~1000 nuclear genes encoding mitochondrial proteins and prioritized rare mutations predicted to disrupt function. Because patients and healthy control individuals harbored a comparable number of such heterozygous alleles, we could not prioritize dominant-acting genes. However, patients showed a fivefold enrichment of genes with two such mutations that could underlie recessive disease. In total, 23 of 42 (55%) patients harbored such recessive genes or pathogenic mtDNA variants. Firm diagnoses were enabled in 10 patients (24%) who had mutations in genes previously linked to disease. Thirteen patients (31%) had mutations in nuclear genes not previously linked to disease. The pathogenicity of two such genes, NDUFB3 and AGK, was supported by complementation studies and evidence from multiple patients, respectively. The results underscore the potential and challenges of deploying NGS in clinical settings.

Indexed as

Amino Acid SequenceBase SequenceCase-Control StudiesCell NucleusChildChild, PreschoolDNA, MitochondrialElectron Transport Complex IExomeFemaleFibroblastsGenes, MitochondrialGenetic Association StudiesHumansInfantInfant, NewbornAGK protein, humanDNA, MitochondrialElectron Transport Complex IPhosphotransferases (Alcohol Group Acceptor)

Identifiers

PMID22277967
PMCPMC3523805
OpenAlexW2072397420

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.