Evidence map›Paper›PMID 22276994›Full record

ArticleACS chemical biology2012

Cyclic peptide inhibitors of HIV-1 capsid-human lysyl-tRNA synthetase interaction.

Varun Dewan, Tao Liu, Kuan-Ming Chen, Ziqing Qian, Yong Xiao, Lawrence Kleiman, Kiran V Mahasenan, Chenglong Li, Hiroshi Matsuo, Dehua Pei and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in ACS chemical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  11. Article
  12. Ribosomal Synthesis of Natural-Product-Like Bicyclic Peptides in Escherichia coli.Chembiochem : a European journal of chemical biology · 2015
    Article
  13. Targeting the HIV RNA genome: high-hanging fruit only needs a longer ladder.Current topics in microbiology and immunology · 2015
    Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Varun DewanOhio State Biochemistry Program, The Ohio State University, Columbus, 43210, United States.
Tao Liu
Kuan-Ming Chen
Ziqing Qian
Yong Xiao
Lawrence Kleiman
Kiran V Mahasenan
Chenglong Li
Hiroshi Matsuo
Dehua Pei
Karin Musier-Forsyth
The Ohio State University · USJewish General Hospital · CAUniversity of Minnesota · US

Funding

Recognition and Catalysis of Phosphotyrosyl ProteinsR01GM062820 · NIGMS · OHIO STATE UNIVERSITY · PI PEI, DEHUA · 2003 to 2015
$3.2M
Development of the Gag/Lysyl tRNA synthetase interaction as a target for anti-HIVR01AI077387 · NIAID · SIR MORTIMER B. DAVIS JEWISH GEN HOSP · PI KLEIMAN, LAWRENCE · 2008 to 2012
$3.1M
Structural Studies of Human APOBEC3G and HIV VifR33AI073167 · NIAID · UNIVERSITY OF MINNESOTA · PI MATSUO, HIROSHI · 2009 to 2011
$1.2M
Structural Studies of Human APOBEC3G and HIV VifR21AI073167 · NIAID · UNIVERSITY OF MINNESOTA · PI MATSUO, HIROSHI · 2007 to 2008
$397k
NIAID NIH HHS AI073167NIAID NIH HHS AI077387NIAID NIH HHS R01 AI077387NIAID NIH HHS R21 AI073167NIAID NIH HHS R33 AI073167NIGMS NIH HHS GM062820NIGMS NIH HHS R01 GM062820
6 · The paper itself

Abstract

The human immunodeficiency virus type 1 (HIV-1) capsid protein (CA) plays a critical role in the viral life cycle. The C-terminal domain (CTD) of CA binds to human lysyl-tRNA synthetase (hLysRS), and this interaction facilitates packaging of host cell tRNA(Lys,3), which serves as the primer for reverse transcription. Here, we report the library synthesis, high-throughput screening, and identification of cyclic peptides (CPs) that bind HIV-1 CA. Scrambling or single-residue changes of the selected peptide sequences eliminated binding, suggesting a sequence-specific mode of interaction. Two peptides (CP2 and CP4) subjected to detailed analysis also inhibited hLysRS/CA interaction in vitro. Nuclear magnetic resonance spectroscopy and mutagenesis studies revealed that both CPs bind to a site proximal to helix 4 of the CA-CTD, which is the known site of hLysRS interaction. These results extend the current repertoire of CA-binding molecules to a new class of peptides targeting a novel site with potential for development into novel antiviral agents.

Indexed as

Antiviral AgentsBinding SitesCapsid ProteinsHigh-Throughput Screening AssaysHIV-1HumansLysine-tRNA LigaseMagnetic Resonance SpectroscopyPeptides, CyclicProtein BindingSmall Molecule LibrariesAntiviral AgentsCapsid ProteinsLysine-tRNA LigasePeptides, CyclicSmall Molecule Libraries

Identifiers

PMID22276994
PMCPMC3330833
OpenAlexW2095491500

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.