Evidence map›Paper›PMID 22276534›Full record

ArticleEvolution; international journal of organic evolution2012

Multiple genetic pathways to similar fitness limits during viral adaptation to a new host.

Andre H Nguyen, Ian J Molineux, Rachael Springman, James J Bull

Abstract read
In one paragraph

Article in Evolution; international journal of organic evolution, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Modeling the Directed Evolution of Broad Host Range Phages.Antibiotics (Basel, Switzerland) · 2022
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Lethal mutagenesis failure may augment viral adaptation.Molecular biology and evolution · 2014
    Article
  14. Article
  15. Article
  16. Review
  17. A cross-species view on viruses.Current opinion in virology · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Andre H NguyenSection of Integrative Biology, The University of Texas at Austin Austin, Texas 78712, USA.
Ian J Molineux
Rachael Springman
James J Bull

Funding

Experimental viral evolution at high mutation rateR01GM057756 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI BULL, JAMES J · 1998 to 2013
$2.9M
MECHANISMS OF PHAGE EXCLUSION SYSTEMR01GM032095 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI MOLINEUX, IAN J · 1985 to 2008
$2.2M
NIGMS NIH HHS GM 32095NIGMS NIH HHS GM57756NIGMS NIH HHS R01 GM032095NIGMS NIH HHS R01 GM057756
6 · The paper itself

Abstract

The gain in fitness during adaptation depends on the supply of beneficial mutations. Despite a good theoretical understanding of how evolution proceeds for a defined set of mutations, there is little understanding of constraints on net fitness-whether fitness will reach a limit despite ongoing selection and mutation, and if there is a limit, what determines it. Here, the dsDNA bacteriophage SP6, a virus of Salmonella, was adapted to Escherichia coli K-12. From an isolate capable of modest growth on E. coli, four lines were adapted for rapid growth by protocols differing in use of mutagen, propagation method, and duration, but using the same media, temperature, and a continual excess of the novel host. Nucleotide changes underlying those adaptations differed greatly in number and identity, but the four lines achieved similar absolute fitness at the end, an increase of more than 4000-fold phage descendants per hour. Thus, the fitness landscape allows multiple genetic paths to the same approximate fitness limit. The existence and causes of fitness limits have ramifications to genome engineering, vaccine design, and "lethal mutagenesis" treatments to cure viral infections.

Indexed as

Biological EvolutionEscherichia coli K12Host SpecificityModels, GeneticPodoviridaeSalmonella

Identifiers

PMID22276534
PMCPMC3377685

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.