ArticleGenome biology and evolution2012
Genome-wide analysis of syntenic gene deletion in the grasses.
Article in Genome biology and evolution, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.
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72 citing papers in PubMed.
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- Identification of receptor-like proteins induced byFrontiers in plant science · 2022Article
- De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.Science (New York, N.Y.) · 2021Article
- Identification and evolution analysis of the JAZ gene family in maize.BMC genomics · 2021Article
- Trajectories of Homoeolog-Specific Expression in AllotetraploidFrontiers in plant science · 2021Article
- A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci.Nature biotechnology · 2020Article
- Understanding Past, and Predicting Future, Niche Transitions based on Grass Flowering Time Variation.Plant physiology · 2020Review
- Shared Genetic Control of Root System Architecture betweenPlant physiology · 2020Article
- RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum.Database : the journal of biological databases and curation · 2020Article
- The Sorghum QTL Atlas: a powerful tool for trait dissection, comparative genomics and crop improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Ectopic expression of ARGOS8 reveals a role for ethylene in root-lodging resistance in maize.The Plant journal : for cell and molecular biology · 2019Article
- Alignment of Rutaceae Genomes Reveals Lower Genome Fractionation Level Than Eudicot Genomes Affected by Extra Polyploidization.Frontiers in plant science · 2019Article
- Semiautomated Feature Extraction from RGB Images for Sorghum Panicle Architecture GWAS.Plant physiology · 2019Article
- Intragenic Meiotic Crossovers Generate Novel Alleles with Transgressive Expression Levels.Molecular biology and evolution · 2018Article
- Tandem Duplicate Genes in Maize Are Abundant and Date to Two Distinct Periods of Time.G3 (Bethesda, Md.) · 2018Article
- Comparison ofThe Plant cell · 2018Article
- Plant genome and transcriptome annotations: from misconceptions to simple solutions.Briefings in bioinformatics · 2018Article
12 more citing papers are in PubMed but not listed here.
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3 authors.
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Abstract
The grasses, Poaceae, are one of the largest and most successful angiosperm families. Like many radiations of flowering plants, the divergence of the major grass lineages was preceded by a whole-genome duplication (WGD), although these events are not rare for flowering plants. By combining identification of syntenic gene blocks with measures of gene pair divergence and different frequencies of ancient gene loss, we have separated the two subgenomes present in modern grasses. Reciprocal loss of duplicated genes or genomic regions has been hypothesized to reproductively isolate populations and, thus, speciation. However, in contrast to previous studies in yeast and teleost fishes, we found very little evidence of reciprocal loss of homeologous genes between the grasses, suggesting that post-WGD gene loss may not be the cause of the grass radiation. The sets of homeologous and orthologous genes and predicted locations of deleted genes identified in this study, as well as links to the CoGe comparative genomics web platform for analyzing pan-grass syntenic regions, are provided along with this paper as a resource for the grass genetics community.
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