Evidence map›Paper›PMID 22272185›Full record

ArticlePLoS biology2012

Sequential analysis of trans-SNARE formation in intracellular membrane fusion.

Kannan Alpadi, Aditya Kulkarni, Veronique Comte, Monique Reinhardt, Andrea Schmidt, Sarita Namjoshi, Andreas Mayer, Christopher Peters

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. CAPS and Munc13: CATCHRs that SNARE Vesicles.Frontiers in endocrinology · 2013
    Review
  5. Retrograde traffic from the Golgi to the endoplasmic reticulum.Cold Spring Harbor perspectives in biology · 2013
    Review
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Kannan AlpadiVerna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, United States of America.
Aditya Kulkarni
Veronique Comte
Monique Reinhardt
Andrea Schmidt
Sarita Namjoshi
Andreas Mayer
Christopher Peters
Baylor College of Medicine · USUniversity of Lausanne · CH

Funding

Intracellular Membrane Fusion Mediated by SNARE ProteinsR01GM087333 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI PETERS, CHRISTOPHER · 2010 to 2014
$1.5M
Coordination of membrane fission and fusion machineries to control size and copyR01GM087477 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI MAYER, ANDREAS R · 2009 to 2010
$614k
NIGMS NIH HHS GM087333NIGMS NIH HHS GM087477NIGMS NIH HHS R01 GM087333NIGMS NIH HHS R01 GM087477
6 · The paper itself

Abstract

SNARE complexes are required for membrane fusion in the endomembrane system. They contain coiled-coil bundles of four helices, three (Q(a), Q(b), and Q(c)) from target (t)-SNAREs and one (R) from the vesicular (v)-SNARE. NSF/Sec18 disrupts these cis-SNARE complexes, allowing reassembly of their subunits into trans-SNARE complexes and subsequent fusion. Studying these reactions in native yeast vacuoles, we found that NSF/Sec18 activates the vacuolar cis-SNARE complex by selectively displacing the vacuolar Q(a) SNARE, leaving behind a Q(bc)R subcomplex. This subcomplex serves as an acceptor for a Q(a) SNARE from the opposite membrane, leading to Q(a)-Q(bc)R trans-complexes. Activity tests of vacuoles with diagnostic distributions of inactivating mutations over the two fusion partners confirm that this distribution accounts for a major share of the fusion activity. The persistence of the Q(bc)R cis-complex and the formation of the Q(a)-Q(bc)R trans-complex are both sensitive to the Rab-GTPase inhibitor, GDI, and to mutations in the vacuolar tether complex, HOPS (HOmotypic fusion and vacuolar Protein Sorting complex). This suggests that the vacuolar Rab-GTPase, Ypt7, and HOPS restrict cis-SNARE disassembly and thereby bias trans-SNARE assembly into a preferred topology.

Indexed as

Membrane FusionAllelesIntracellular MembranesKineticsModels, BiologicalMultiprotein ComplexesMutationOxidation-ReductionProtein BindingProtein Stabilityrab GTP-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSNARE ProteinsVacuolesMultiprotein Complexesrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSNARE Proteins

Identifiers

PMID22272185
PMCPMC3260307
OpenAlexW2081423676

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.