Evidence map›Paper›PMID 22267661›Full record

ArticleApplied and environmental microbiology2012

Cloning, Baeyer-Villiger biooxidations, and structures of the camphor pathway 2-oxo-Δ(3)-4,5,5-trimethylcyclopentenylacetyl-coenzyme A monooxygenase of Pseudomonas putida ATCC 17453.

Hannes Leisch, Rong Shi, Stephan Grosse, Krista Morley, Hélène Bergeron, Miroslaw Cygler, Hiroaki Iwaki, Yoshie Hasegawa, Peter C K Lau

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 54 citations in OpenAlex.

  1. Biodegradation of the endocrine-disrupting compound bisphenol F byApplied and environmental microbiology · 2025
    Article
  2. Review
  3. Article
  4. Structural characterization of borneol dehydrogenase from Pseudomonas sp. TCU-HL1.Acta crystallographica. Section F, Structural biology communications · 2020
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. First chemo-enzymatic synthesis of the (Monatshefte fur chemie · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Microbial monoterpene transformations-a review.Frontiers in microbiology · 2014
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Hannes LeischBiotechnology Research Institute, National Research Council Canada, Montreal, Quebec, Canada.
Rong Shi
Stephan Grosse
Krista Morley
Hélène Bergeron
Miroslaw Cygler
Hiroaki Iwaki
Yoshie Hasegawa
Peter C K Lau
National Research Council Canada · CABiotechnology Research Institute · CAKansai University · JPMcGill University · CANational Academies of Sciences, Engineering, and Medicine · US

Funding

Canadian Institutes of Health Research GSP-48370
6 · The paper itself

Abstract

A dimeric Baeyer-Villiger monooxygenase (BVMO) catalyzing the lactonization of 2-oxo-Δ(3)-4,5,5-trimethylcyclopentenylacetyl-coenzyme A (CoA), a key intermediate in the metabolism of camphor by Pseudomonas putida ATCC 17453, had been initially characterized in 1983 by Ougham and coworkers (H. J. Ougham, D. G. Taylor, and P. W. Trudgill, J. Bacteriol. 153:140-152, 1983). Here we cloned and overexpressed the 2-oxo-Δ(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase (OTEMO) in Escherichia coli and determined its three-dimensional structure with bound flavin adenine dinucleotide (FAD) at a 1.95-Å resolution as well as with bound FAD and NADP(+) at a 2.0-Å resolution. OTEMO represents the first homodimeric type 1 BVMO structure bound to FAD/NADP(+). A comparison of several crystal forms of OTEMO bound to FAD and NADP(+) revealed a conformational plasticity of several loop regions, some of which have been implicated in contributing to the substrate specificity profile of structurally related BVMOs. Substrate specificity studies confirmed that the 2-oxo-Δ(3)-4,5,5-trimethylcyclopentenylacetic acid coenzyme A ester is preferred over the free acid. However, the catalytic efficiency (k(cat)/K(m)) favors 2-n-hexyl cyclopentanone (4.3 × 10(5) M(-1) s(-1)) as a substrate, although its affinity (K(m) = 32 μM) was lower than that of the CoA-activated substrate (K(m) = 18 μM). In whole-cell biotransformation experiments, OTEMO showed a unique enantiocomplementarity to the action of the prototypical cyclohexanone monooxygenase (CHMO) and appeared to be particularly useful for the oxidation of 4-substituted cyclohexanones. Overall, this work extends our understanding of the molecular structure and mechanistic complexity of the type 1 family of BVMOs and expands the catalytic repertoire of one of its original members.

Indexed as

Amino Acid SequenceCamphorCircular DichroismCloning, MolecularCrystallography, X-RayCyclopentanesEscherichia coliFlavin-Adenine DinucleotideMolecular Sequence DataNADPOxidation-ReductionOxygenasesPseudomonas putidaSequence Analysis, DNASubstrate Specificity2-oxo-delta(3)-4,5,5-trimethylcyclopentenylacetic acid2-oxo-delta-(3)-4,5,5-trimethylcyclopentenylacetyl-CoA oxygenaseCamphorCyclopentanesFlavin-Adenine DinucleotideNADPOxygenases

Identifiers

PMID22267661
PMCPMC3302634
OpenAlexW1976467817

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.