Evidence map›Paper›PMID 22263650›Full record

ArticleAnalytical chemistry2012

Observing single cell NF-κB dynamics under stimulant concentration gradient.

Yousef Awwad, Tao Geng, Albert S Baldwin, Chang Lu

Abstract read
In one paragraph

Article in Analytical chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yousef AwwadSchool of Biomedical Engineering and Sciences, Virginia Tech-Wake Forest University, Blacksburg, Virginia 24061, USA.
Tao Geng
Albert S Baldwin
Chang Lu

Funding

Unexpected Nucleosomal Functions for the IKKsR37AI035098 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BALDWIN, ALBERT SIDNEY · 2004 to 2013
$3.2M
TNF SIGNALING--ACTIVATION OF NF-KB AND GENE EXPRESSIONR01AI035098 · NIAID · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI BALDWIN, ALBERT SIDNEY · 1994 to 2003
$981k
NIAID NIH HHS AI35098NIAID NIH HHS R01 AI035098NIAID NIH HHS R37 AI035098
6 · The paper itself

Abstract

Study of cell signaling often requires examination of the cellular dynamics under variation in the stimulant concentration. Such variation has typically been conducted by dispensing cell populations in a number of chambers or wells containing discrete concentrations. Such practice adds to the complexity associated with experimental or device design and requires substantial labor for implementation. Furthermore, there is also potential risk of missing important results due to the often arbitrary selection of discrete concentration values for testing. In this Letter, we study NF-κB activation and translocation at the single cell level using a microfluidic device that generates continuously varying concentration gradient. We use only three device settings to cover stimulant (interleukin-1β) concentrations of 4 orders of magnitude (0.001-10 ng/mL). Such device allows us to study temporal dynamics of NF-κB in single cells under different stimulant concentrations by real-time imaging. Interestingly, our results reveal that, while the percent of cells with NF-κB translocation decreases with lower stimulant concentration in the range of 0.1-0.001 ng/mL, the response time of such translocation remains constant, reflected by the single cell data.

Indexed as

Microfluidic Analytical TechniquesAnimalsCHO CellsCricetinaeCricetulusGreen Fluorescent ProteinsHumansInterleukin-1betaMicroscopy, FluorescenceNF-kappa BRecombinant Fusion ProteinsSignal TransductionTranscription Factor RelAGreen Fluorescent ProteinsInterleukin-1betaNF-kappa BRecombinant Fusion ProteinsTranscription Factor RelA

Identifiers

PMID22263650
PMCPMC3299085

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.