Evidence map›Paper›PMID 22263561›Full record

ReviewFree radical research2012

Biologically relevant oxidants and terminology, classification and nomenclature of oxidatively generated damage to nucleobases and 2-deoxyribose in nucleic acids.

Jean Cadet, Steffen Loft, Ryszard Olinski, Mark D Evans, Karol Bialkowski, J Richard Wagner, Peter C Dedon, Peter Møller, Marc M Greenberg, Marcus S Cooke

Abstract readReview
In one paragraph

Review in Free radical research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 137 citations in OpenAlex.

  1. Article
  2. Review
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  6. Mapping the future of oxidative RNA damage in neurodegeneration: Rethinking the status quo with new tools.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 8 institutions in 6 countries.

Jean CadetDirection des Sciences de Matière, Institut Nanosciences et Cryogénie, CEA/Grenoble, Grenoble Cedex 9, France. jean.cadet@cea.fr
Steffen Loft
Ryszard Olinski
Mark D Evans
Karol Bialkowski
J Richard Wagner
Peter C Dedon
Peter Møller
Marc M Greenberg
Marcus S Cooke
University of Copenhagen · DKUniversity of Leicester · GBCEA Grenoble · FRCollegium Medicum in Bydgoszcz · PLJohns Hopkins University · USMassachusetts Institute of Technology · USNicolaus Copernicus University · PLUniversité de Sherbrooke · CA

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LEVINE, STUART S · 1985 to 2020
$25.6M
Reaction and Diffusion of NO in Biological SystemsP01CA026731 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI TANNENBAUM, STEVEN R · 1985 to 2018
$25.4M
Repair, Replication, and Detection of Oxidatively Damaged DNAR01GM063028 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREENBERG, MARC M · 2002 to 2018
$5.4M
Mechanistic Studies of Nucleic Acid Damage and Their Applications.R01GM054996 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREENBERG, MARC M · 1997 to 2019
$5.4M
Medical Research Council CG1001808/1Medical Research Council G1001808NCI NIH HHS P01 CA026731NIEHS NIH HHS P30 ES002109NIGMS NIH HHS GM-054996NIGMS NIH HHS GM-063028NIGMS NIH HHS R01 GM054996NIGMS NIH HHS R01 GM063028
6 · The paper itself

Abstract

A broad scientific community is involved in investigations aimed at delineating the mechanisms of formation and cellular processing of oxidatively generated damage to nucleic acids. Perhaps as a consequence of this breadth of research expertise, there are nomenclature problems for several of the oxidized bases including 8-oxo-7,8-dihydroguanine (8-oxoGua), a ubiquitous marker of almost every type of oxidative stress in cells. Efforts to standardize the nomenclature and abbreviations of the main DNA degradation products that arise from oxidative pathways are reported. Information is also provided on the main oxidative radicals, non-radical oxygen species, one-electron agents and enzymes involved in DNA degradation pathways as well in their targets and reactivity. A brief classification of oxidatively generated damage to DNA that may involve single modifications, tandem base modifications, intrastrand and interstrand cross-links together with DNA-protein cross-links and base adducts arising from the addition of lipid peroxides breakdown products is also included.

Indexed as

DNA AdductsDNA DamageOxidative StressAnimalsDeoxyriboseGuanineHumansNucleic AcidsOxidantsOxidation-ReductionReactive Oxygen Species8-hydroxyguanineDeoxyriboseDNA AdductsGuanineNucleic AcidsOxidantsReactive Oxygen Species

Identifiers

PMID22263561
PMCPMC3864884
OpenAlexW2111290741

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.