Evidence map›Paper›PMID 22262734›Full record

ArticleNucleic acids research2012

Effects of Friedreich's ataxia GAA repeats on DNA replication in mammalian cells.

Gurangad S Chandok, Mayank P Patel, Sergei M Mirkin, Maria M Krasilnikova

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
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  10. Creation and resolution of non-B-DNA structural impediments during replication.Critical reviews in biochemistry and molecular biology · 2022
    Article
  11. Article
  12. Review
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  17. Review
  18. Mechanisms of genetic instability caused by (CGG)Nature structural & molecular biology · 2018
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Gurangad S ChandokDepartment of Biochemistry and Molecular Biology, Penn State University, University Park, PA 16802, USA.
Mayank P Patel
Sergei M Mirkin
Maria M Krasilnikova
Tufts University · USPennsylvania State University · US

Funding

REPLICATION OF SIMPLE DNA REPEATSR01GM060987 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MIRKIN, SERGEI · 2001 to 2017
$4.9M
Computational and Biochemical Analysis of Microsatellite Life CycleR01GM087472 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI ECKERT, KRISTIN A, MAKOVA, KATERYNA · 2009 to 2012
$1.4M
NIGMS NIH HHS GM087472NIGMS NIH HHS GM60987
6 · The paper itself

Abstract

Friedreich's ataxia (FRDA) is a common hereditary degenerative neuro-muscular disorder caused by expansions of the (GAA)n repeat in the first intron of the frataxin gene. The expanded repeats from parents frequently undergo further significant length changes as they are passed on to progeny. Expanded repeats also show an age-dependent instability in somatic cells, albeit on a smaller scale than during intergenerational transmissions. Here we studied the effects of (GAA)n repeats of varying lengths and orientations on the episomal DNA replication in mammalian cells. We have recently shown that the very first round of the transfected DNA replication occurs in the lack of the mature chromatin, does not depend on the episomal replication origin and initiates at multiple single-stranded regions of plasmid DNA. We now found that expanded GAA repeats severely block this first replication round post plasmid transfection, while the subsequent replication cycles are only mildly affected. The fact that GAA repeats affect various replication modes in a different way might shed light on their differential expansions characteristic for FRDA.

Indexed as

DNA ReplicationTrinucleotide Repeat ExpansionAnimalsCell LineChlorocebus aethiopsCOS CellsDNAFrataxinFriedreich AtaxiaHerpesvirus 4, HumanHumansIron-Binding ProteinsPlasmidsReplication OriginSimian virus 40DNAFrataxinIron-Binding Proteins

Identifiers

PMID22262734
PMCPMC3351192
OpenAlexW1967512385

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.