Evidence map›Paper›PMID 22260357›Full record

ArticleMolecular cytogenetics2012

A recurrent translocation is mediated by homologous recombination between HERV-H elements.

Karen E Hermetz, Urvashi Surti, Jannine D Cody, M Katharine Rudd

Open access · goldAbstract read
In one paragraph

Article in Molecular cytogenetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

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  11. Mouse model implicates GNB3 duplication in a childhood obesity syndrome.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  12. Are human endogenous retroviruses pathogenic? An approach to testing the hypothesis.BioEssays : news and reviews in molecular, cellular and developmental biology · 2013
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Karen E HermetzDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA. katie.rudd@emory.edu.
Urvashi Surti
Jannine D Cody
M Katharine Rudd
Emory University · USThe University of Texas Health Science Center at San Antonio · USUniversity of Pittsburgh · US

Funding

Mechanism of subtelomeric breaksR01MH092902 · NIMH · EMORY UNIVERSITY · PI RUDD, MARY KATHARINE · 2010 to 2013
$1.6M
NIMH NIH HHS R01 MH092902
6 · The paper itself

Abstract

backgroundChromosome rearrangements are caused by many mutational mechanisms; of these, recurrent rearrangements can be particularly informative for teasing apart DNA sequence-specific factors. Some recurrent translocations are mediated by homologous recombination between large blocks of segmental duplications on different chromosomes. Here we describe a recurrent unbalanced translocation casued by recombination between shorter homologous regions on chromosomes 4 and 18 in two unrelated children with intellectual disability.

resultsArray CGH resolved the breakpoints of the 6.97-Megabase (Mb) loss of 18q and the 7.30-Mb gain of 4q. Sequencing across the translocation breakpoints revealed that both translocations occurred between 92%-identical human endogenous retrovirus (HERV) elements in the same orientation on chromosomes 4 and 18. In addition, we find sequence variation in the chromosome 4 HERV that makes one allele more like the chromosome 18 HERV.

conclusionsHomologous recombination between HERVs on the same chromosome is known to cause chromosome deletions, but this is the first report of interchromosomal HERV-HERV recombination leading to a translocation. It is possible that normal sequence variation in substrates of non-allelic homologous recombination (NAHR) affects the alignment of recombining segments and influences the propensity to chromosome rearrangement.

Identifiers

PMID22260357
PMCPMC3292815
OpenAlexW2115368313

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.