Evidence map›Paper›PMID 22259188›Full record

ArticleThe Journal of nutrition2012

Genetic variation in GPX1 is associated with GPX1 activity in a comprehensive analysis of genetic variations in selenoenzyme genes and their activity and oxidative stress in humans.

Yumie Takata, Irena B King, Johanna W Lampe, Raymond F Burk, Kristina E Hill, Regina M Santella, Alan R Kristal, David J Duggan, Thomas L Vaughan, Ulrike Peters

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of nutrition, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Yumie TakataPublic Health Science Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Irena B King
Johanna W Lampe
Raymond F Burk
Kristina E Hill
Regina M Santella
Alan R Kristal
David J Duggan
Thomas L Vaughan
Ulrike Peters
Fred Hutch Cancer Center · USVanderbilt University · USColumbia University · USTranslational Genomics Research Institute · USUniversity of New Mexico · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
PHYLOGENIES of Barrett's Esophagus LineagesP01CA091955 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GRADY, WILLIAM MALLORY · 2002 to 2019
$35.9M
Human Se Nutritional Requirement and Biomarkers in Health and DiseaseR01DK058763 · NIDDK · VANDERBILT UNIVERSITY · PI BURK, RAYMOND F. · 2001 to 2010
$3.6M
Prospective Study on Selenium, Genectics of Selenoenzymes, and Colorectal CancerR01CA120582 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETERS, ULRIKE · 2006 to 2014
$2.1M
ESTABLISHED INVESTIGATOR AWARD IN CANCER PREVENTION AND CONTROLK05CA124911 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L · 2007 to 2016
$1.6M
Selenium genetic variation in selenoenzymes and prostate cancerK22CA118421 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETERS, ULRIKE · 2006 to 2008
$468k
NCI NIH HHS K05 CA124911NCI NIH HHS K05CA124911NCI NIH HHS K22 CA118421NCI NIH HHS P01 CA091955NCI NIH HHS P30 CA015704NCI NIH HHS R01 CA120582NIDDK NIH HHS DK58763NIDDK NIH HHS R01 DK058763
6 · The paper itself

Abstract

Previous studies suggest some effects of selenium on risk of several chronic diseases, which may be mediated through a small number of selenoenzymes with antioxidant properties. In this cross-sectional analysis of 195 participants from the Seattle Barrett's Esophagus Study who were free of esophageal cancer at the time of blood draw, we examined whether the number of the minor alleles in 26 tagging single nucleotide polymorphisms (SNP) of five selenoenzyme genes [i.e., glutathione peroxidase 1-4 (GPX1-4) and selenoprotein P (SEPP1)] was associated with activity of GPX1 in white blood cells and GPX3 in plasma, and concentrations of SEPP1 and markers of oxidative stress [malondialdehyde (MDA) and protein carbonyl content] in plasma. At the gene level, associations were observed between overall variation in GPX1 and GPX1 activity (P = 0.02) as well as between overall variation in GPX2 and SEPP1 concentrations (P = 0.03). By individual SNP, two variants in GPX1 (rs8179164 and rs1987628) showed a suggestive association with GPX1 activity (P = 0.10 and 0.08, respectively) and two GPX2 variants (rs4902346 and rs2071566) were associated with SEPP1 concentration (P = 0.004 and 0.002, respectively). Furthermore, two SNP in the SEPP1 gene (rs230813 and rs230819) were associated with MDA concentrations (P = 0.03 and 0.02, respectively). Overall, our study supports the hypothesis that common genetic variants in selenoenzymes affect their activity.

Indexed as

Polymorphism, Single NucleotideAgedCross-Sectional StudiesFemaleGlutathione PeroxidaseGlutathione Peroxidase GPX1HumansMaleMalondialdehydeMiddle AgedOxidative StressPhospholipid Hydroperoxide Glutathione PeroxidaseProtein CarbonylationRisk FactorsSeleniumSelenoprotein PGlutathione PeroxidaseGlutathione Peroxidase GPX1GPX1 protein, humanGPX2 protein, humanGPX3 protein, humanMalondialdehydePhospholipid Hydroperoxide Glutathione PeroxidaseSeleniumSelenoprotein P

Identifiers

PMID22259188
PMCPMC3278265
OpenAlexW2138613012

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.