Evidence map›Paper›PMID 22258915›Full record

ArticleCerebellum (London, England)2012

Principal component analysis of cerebellar shape on MRI separates SCA types 2 and 6 into two archetypal modes of degeneration.

Brian C Jung, Soo I Choi, Annie X Du, Jennifer L Cuzzocreo, Zhuo Z Geng, Howard S Ying, Susan L Perlman, Arthur W Toga, Jerry L Prince, Sarah H Ying

Abstract read
In one paragraph

Article in Cerebellum (London, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Landmark Based Shape Analysis for Cerebellar Ataxia Classification and Cerebellar Atrophy Pattern Visualization.Proceedings of SPIE--the International Society for Optical Engineering · 2016
    Article
  3. Article
  4. Article
  5. Article
  6. Deep Learning for Cerebellar Ataxia Classification and Functional Score Regression.Machine learning in medical imaging. MLMI (Workshop) · 2014
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Brian C JungDepartment of Neurology, The Johns Hopkins University, School of Medicine, Baltimore, MD, 21287, USA.
Soo I Choi
Annie X Du
Jennifer L Cuzzocreo
Zhuo Z Geng
Howard S Ying
Susan L Perlman
Arthur W Toga
Jerry L Prince
Sarah H Ying
Johns Hopkins Medicine · USUniversity of California, Los Angeles · US

Funding

BIOMEDICAL ENGINEERING TRAINING PROGRAMT32GM007057 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI KANOLD, PATRICK O, KARCHIN, RACHEL · 1985 to 2023
$10.4M
Training Program in Hearing and BalanceT32DC000023 · NIDCD · JOHNS HOPKINS UNIVERSITY · PI CULLEN, KATHLEEN E · 1989 to 2025
$8.7M
OCULOMOTOR DISORDERS: CLINICAL AND EXPERIMENTAL STUDYR01EY001849 · NEI · JOHNS HOPKINS UNIVERSITY · PI ZEE, DAVID SAMUE. · 1985 to 2011
$5.4M
Automatic Cerebellar MRI Labeling In Health and DiseaseR01NS056307 · NINDS · JOHNS HOPKINS UNIVERSITY · PI PRINCE, JERRY L · 2006 to 2015
$3.0M
Ocular Motor Adaptation in Health and DiseaseR01EY019347 · NEI · JOHNS HOPKINS UNIVERSITY · PI YING, HOWARD SHANN-CHERNG · 2008 to 2013
$1.9M
Clinical Research Consortium for Spinocerebellar AtaxiasRC1NS068897 · NINDS · UNIVERSITY OF FLORIDA · PI ASHIZAWA, TETSUO · 2009 to 2010
$1.0M
Cortical Reconstruction and Analysis SoftwareR01NS054255 · NINDS · JOHNS HOPKINS UNIVERSITY · PI BAZIN, PIERRE-LOUIS · 2006 to 2009
$996k
Ocular motor control and MRI in hereditary ataxiaK23EY015802 · NEI · JOHNS HOPKINS UNIVERSITY · PI YING, SARAH H · 2005 to 2009
$814k
TRAINING PROGRAM IN NEUROIMAGINGT32MH019950 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TOGA, ARTHUR W · 1996 to 2003
$734k
A research and clinical tool for connectivity-based analysis of brainstem anatomyR21NS059830 · NINDS · JOHNS HOPKINS UNIVERSITY · PI YING, SARAH H · 2008 to 2009
$407k
NEI NIH HHS 1K23EY015802NEI NIH HHS 5R01EY019347NEI NIH HHS K23 EY015802NEI NIH HHS R01 EY001849NEI NIH HHS R01 EY01849NEI NIH HHS R01 EY019347NIDCD NIH HHS 5T32DC00023NIDCD NIH HHS T32 DC000023NIGMS NIH HHS 5T32GM007057NIGMS NIH HHS T32 GM007057NIMH NIH HHS 5T32MH019950NIMH NIH HHS T32 MH019950NINDS NIH HHS 1R01NS056307NINDS NIH HHS 5R21NS059830NINDS NIH HHS 5RC1NS068897NINDS NIH HHS R01 NS054255NINDS NIH HHS R01NS054255NINDS NIH HHS R01 NS056307NINDS NIH HHS R21 NS059830NINDS NIH HHS RC1 NS068897
6 · The paper itself

Abstract

Although "cerebellar ataxia" is often used in reference to a disease process, presumably there are different underlying pathogenetic mechanisms for different subtypes. Indeed, spinocerebellar ataxia (SCA) types 2 and 6 demonstrate complementary phenotypes, thus predicting a different anatomic pattern of degeneration. Here, we show that an unsupervised classification method, based on principal component analysis (PCA) of cerebellar shape characteristics, can be used to separate SCA2 and SCA6 into two classes, which may represent disease-specific archetypes. Patients with SCA2 (n=11) and SCA6 (n=7) were compared against controls (n=15) using PCA to classify cerebellar anatomic shape characteristics. Within the first three principal components, SCA2 and SCA6 differed from controls and from each other. In a secondary analysis, we studied five additional subjects and found that these patients were consistent with the previously defined archetypal clusters of clinical and anatomical characteristics. Secondary analysis of five subjects with related diagnoses showed that disease groups that were clinically and pathophysiologically similar also shared similar anatomic characteristics. Specifically, Archetype #1 consisted of SCA3 (n=1) and SCA2, suggesting that cerebellar syndromes accompanied by atrophy of the pons may be associated with a characteristic pattern of cerebellar neurodegeneration. In comparison, Archetype #2 was comprised of disease groups with pure cerebellar atrophy (episodic ataxia type 2 (n=1), idiopathic late-onset cerebellar ataxias (n=3), and SCA6). This suggests that cerebellar shape analysis could aid in discriminating between different pathologies. Our findings further suggest that magnetic resonance imaging is a promising imaging biomarker that could aid in the diagnosis and therapeutic management in patients with cerebellar syndromes.

Indexed as

AdultAge of OnsetAtrophyCerebellumDiagnosis, DifferentialFemaleHumansMagnetic Resonance ImagingMaleMiddle AgedPhenotypePrincipal Component AnalysisSpinocerebellar Ataxias

Identifiers

PMID22258915
PMCPMC3932524
OpenAlexW2079878788

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.