Evidence map›Paper›PMID 22258240›Full record

ArticleJournal of virology2012

Mapping of Chikungunya virus interactions with host proteins identified nsP2 as a highly connected viral component.

Mehdi Bouraï, Marianne Lucas-Hourani, Hans Henrik Gad, Christian Drosten, Yves Jacob, Lionel Tafforeau, Patricia Cassonnet, Louis M Jones, Delphine Judith, Thérèse Couderc and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed, 1 pooled it
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 1 synthesis or guideline pooled it, 119 citations in OpenAlex.

  1. Pooled it
  2. Review
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  8. Article
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  13. Article
  14. Article
  15. Understanding Molecular Pathogenesis with Chikungunya Virus Research Tools.Current topics in microbiology and immunology · 2022
    Review
  16. Review
  17. Seneca Valley Virus 3CFrontiers in microbiology · 2022
    Article
  18. Article
  19. Article
  20. Autophagy receptors as viral targets.Cellular & molecular biology letters · 2021
    Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Mehdi BouraïUnité de Génomique Virale et Vaccination, Institut Pasteur, CNRS URA 3015, Paris, France.
Marianne Lucas-Hourani
Hans Henrik Gad
Christian Drosten
Yves Jacob
Lionel Tafforeau
Patricia Cassonnet
Louis M Jones
Delphine Judith
Thérèse Couderc
Marc Lecuit
Patrice André
Beate Mareike Kümmerer
Vincent Lotteau
Philippe Desprès
Frédéric Tangy
Pierre-Olivier Vidalain
Institut Pasteur · FRUniversité Claude Bernard Lyon 1 · FRUniversity of Bonn · DECentre National de la Recherche Scientifique · FRHôpital Necker-Enfants Malades · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chikungunya virus (CHIKV) is a mosquito-transmitted alphavirus that has been responsible for an epidemic outbreak of unprecedented magnitude in recent years. Since then, significant efforts have been made to better understand the biology of this virus, but we still have poor knowledge of CHIKV interactions with host cell components at the molecular level. Here we describe the extensive use of high-throughput yeast two-hybrid (HT-Y2H) assays to characterize interactions between CHIKV and human proteins. A total of 22 high-confidence interactions, which essentially involved the viral nonstructural protein nsP2, were identified and further validated in protein complementation assay (PCA). These results were integrated to a larger network obtained by extensive mining of the literature for reports on alphavirus-host interactions. To investigate the role of cellular proteins interacting with nsP2, gene silencing experiments were performed in cells infected by a recombinant CHIKV expressing Renilla luciferase as a reporter. Collected data showed that heterogeneous nuclear ribonucleoprotein K (hnRNP-K) and ubiquilin 4 (UBQLN4) participate in CHIKV replication in vitro. In addition, we showed that CHIKV nsP2 induces a cellular shutoff, as previously reported for other Old World alphaviruses, and determined that among binding partners identified by yeast two-hybrid methods, the tetratricopeptide repeat protein 7B (TTC7B) plays a significant role in this activity. Altogether, this report provides the first interaction map between CHIKV and human proteins and describes new host cell proteins involved in the replication cycle of this virus.

Indexed as

Host-Pathogen InteractionsProtein Interaction MapsAlphavirus InfectionsCarrier ProteinsCell LineChikungunya FeverChikungunya virusHeterogeneous-Nuclear Ribonucleoprotein KHumansNuclear ProteinsViral Nonstructural ProteinsCarrier ProteinsHeterogeneous-Nuclear Ribonucleoprotein KNuclear ProteinsUBQLN4 protein, humanViral Nonstructural Proteins

Identifiers

PMID22258240
PMCPMC3302312
OpenAlexW2141196507

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.