Evidence map›Paper›PMID 22256911›Full record

ArticleJournal of proteome research2012

Quantotypic properties of QconCAT peptides targeting bovine host response to Streptococcus uberis.

Stine L Bislev, Ulrike Kusebauch, Marius C Codrea, Robert J Beynon, Victoria M Harman, Christine M Røntved, Ruedi Aebersold, Robert L Moritz, Emøke Bendixen

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
10.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
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  6. Animal board invited review: advances in proteomics for animal and food sciences.Animal : an international journal of animal bioscience · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Stine L BislevDepartment of Animal Science, Faculty of Science and Technology, Aarhus University , 8830 Tjele, Denmark.
Ulrike Kusebauch
Marius C Codrea
Robert J Beynon
Victoria M Harman
Christine M Røntved
Ruedi Aebersold
Robert L Moritz
Emøke Bendixen
Aarhus University · DKInstitute for Systems Biology · USUniversity of Liverpool · GBUniversity of Zurich · CH

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DUDLEY, AIMEE M · 2006 to 2016
$30.6M
Complete Human Peptide- and MRM-AtlasRC2HG005805 · NHGRI · INSTITUTE FOR SYSTEMS BIOLOGY · PI HOOD, LEROY E, MORITZ, ROBERT L · 2009 to 2010
$4.6M
Biotechnology and Biological Sciences Research Council BB/C007433/1Biotechnology and Biological Sciences Research Council BB/G009112/1NHGRI NIH HHS RC2 HG005805NIGMS NIH HHS P50 GM076547
6 · The paper itself

Abstract

Mammalian host response to pathogens is associated with fluctuations in high abundant proteins in body fluids as well as in regulation of proteins expressed in relatively low copy numbers like cytokines secreted from immune cells and endothelium. Hence, efficient monitoring of proteins associated with host response to pathogens remains a challenging task. In this paper, we present a targeted proteome analysis of a panel of 20 proteins that are widely believed to be key players and indicators of bovine host response to mastitis pathogens. Stable isotope-labeled variants of two concordant proteotypic peptides from each of these 20 proteins were obtained through the QconCAT method. We present the quantotypic properties of these 40 proteotypic peptides and discuss their application to research in host-pathogen interactions. Our results clearly demonstrate a robust monitoring of 17 targeted host-response proteins. Twelve of these were readily quantified in a simple extraction of mammary gland tissues, while the expression levels of the remaining proteins were too low for direct and stable quantification; hence, their accurate quantification requires further fractionation of mammary gland tissues.

Indexed as

Host-Pathogen InteractionsAmino Acid SequenceAnimalsCattleChromatography, Ion ExchangeFemaleImmunologic FactorsInflammation MediatorsMammary Glands, AnimalMass SpectrometryMastitis, BovineMolecular Sequence DataPeptide FragmentsPeptide MappingProtein StabilityProteolysisImmunologic FactorsInflammation MediatorsPeptide FragmentsProteome

Identifiers

PMID22256911
PMCPMC3342530
OpenAlexW2134032197

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.