Evidence map›Paper›PMID 22256869›Full record

ReviewPharmacogenomics2012

Semantically enabling pharmacogenomic data for the realization of personalized medicine.

Matthias Samwald, Adrien Coulet, Iker Huerga, Robert L Powers, Joanne S Luciano, Robert R Freimuth, Frederick Whipple, Elgar Pichler, Eric Prud'hommeaux, Michel Dumontier and 1 more

Erratum issuedAbstract readReview
In one paragraph

Review in Pharmacogenomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Evaluation of research in biomedical ontologies.Briefings in bioinformatics · 2013
    Article
  5. Article
  6. Electronic health record design and implementation for pharmacogenomics: a local perspective.Genetics in medicine : official journal of the American College of Medical Genetics · 2013
    Article
  7. Pharmacogenomics in the pocket of every patient? A prototype based on quick response codes.Journal of the American Medical Informatics Association : JAMIA · 2013
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

11 authors.

Matthias SamwaldDepartment of Medical Statistics & Bioinformatics, Leiden University Medical Center/Informatics Institute, University of Amsterdam, Einthovenweg 20, 2333 ZC Leiden, The Netherlands.
Adrien Coulet
Iker Huerga
Robert L Powers
Joanne S Luciano
Robert R Freimuth
Frederick Whipple
Elgar Pichler
Eric Prud'hommeaux
Michel Dumontier
M Scott Marshall

Funding

Pharmacogenetics of Phase II Drug Metabolizing EnzymesU19GM061388 · NIGMS · MAYO CLINIC ROCHESTER · PI WEINSHILBOUM, RICHARD M. · 2010 to 2014
$15.8M
NIGMS NIH HHS U19 GM061388NIGMS NIH HHS U19 GM61388
6 · The paper itself

Abstract

Understanding how each individual's genetics and physiology influences pharmaceutical response is crucial to the realization of personalized medicine and the discovery and validation of pharmacogenomic biomarkers is key to its success. However, integration of genotype and phenotype knowledge in medical information systems remains a critical challenge. The inability to easily and accurately integrate the results of biomolecular studies with patients' medical records and clinical reports prevents us from realizing the full potential of pharmacogenomic knowledge for both drug development and clinical practice. Herein, we describe approaches using Semantic Web technologies, in which pharmacogenomic knowledge relevant to drug development and medical decision support is represented in such a way that it can be efficiently accessed both by software and human experts. We suggest that this approach increases the utility of data, and that such computational technologies will become an essential part of personalized medicine, alongside diagnostics and pharmaceutical products.

Indexed as

Information SystemsDatabases, GeneticHumansInternetPharmacogeneticsPrecision MedicineSemantics

Identifiers

PMID22256869
PMCPMC3957334

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.