ArticlePloS one2012
Armadillo 1.1: an original workflow platform for designing and conducting phylogenetic analysis and simulations.
Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Insights into the Species Diversity and Features of Fungi in theJournal of fungi (Basel, Switzerland) · 2026Article
- CamITree: a streamlined software for phylogenetic analysis of viral and mitochondrial genomes.BMC bioinformatics · 2025Article
- Identification and Pathogenicity ofMicroorganisms · 2024Article
- AlexandrusPS: A User-Friendly Pipeline for the Automated Detection of Orthologous Gene Clusters and Subsequent Positive Selection Analysis.Genome biology and evolution · 2023Article
- Biodiversity of Fungi Inhabiting European Blueberry in North-Western Russia and in Finland.Doklady biological sciences : proceedings of the Academy of Sciences of the USSR, Biological sciences sections · 2022Article
- Distinction ofJournal of fungi (Basel, Switzerland) · 2022Article
- Fusarium head blight in the Russian Far East: 140 years after description of the 'drunken bread' problem.PeerJ · 2021Article
- Evidence ofMicroorganisms · 2020Article
- LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation.BMC bioinformatics · 2019Article
- NGPhylogeny.fr: new generation phylogenetic services for non-specialists.Nucleic acids research · 2019Article
- Characterization and expression analysis of Galnts in developing Strongylocentrotus purpuratus embryos.PloS one · 2017Article
- LMAP: Lightweight Multigene Analyses in PAML.BMC bioinformatics · 2016Article
- Classification of bioinformatics workflows using weighted versions of partitioning and hierarchical clustering algorithms.BMC bioinformatics · 2015Article
- Parallel computing in genomic research: advances and applications.Advances and applications in bioinformatics and chemistry : AABC · 2015Review
- Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system.BMC bioinformatics · 2014Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In this paper we introduce Armadillo v1.1, a novel workflow platform dedicated to designing and conducting phylogenetic studies, including comprehensive simulations. A number of important phylogenetic and general bioinformatics tools have been included in the first software release. As Armadillo is an open-source project, it allows scientists to develop their own modules as well as to integrate existing computer applications. Using our workflow platform, different complex phylogenetic tasks can be modeled and presented in a single workflow without any prior knowledge of programming techniques. The first version of Armadillo was successfully used by professors of bioinformatics at Université du Quebec à Montreal during graduate computational biology courses taught in 2010-11. The program and its source code are freely available at: <http://www.bioinfo.uqam.ca/armadillo>.
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