Evidence map›Paper›PMID 22253597›Full record

ArticlePLoS pathogens2012

The bZIP transcription factor Rca1p is a central regulator of a novel CO₂ sensing pathway in yeast.

Fabien Cottier, Martine Raymond, Oliver Kurzai, Marianne Bolstad, Worraanong Leewattanapasuk, Claudia Jiménez-López, Michael C Lorenz, Dominique Sanglard, Libuše Váchová, Norman Pavelka and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Effects of COCurrent opinion in microbiology · 2024
    Review
  6. A COmBio · 2024
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  7. Article
  8. Article
  9. Toward Best Practices for Controlling Mammalian Cell Culture Environments.Frontiers in cell and developmental biology · 2022
    Review
  10. The Roles of Chromatin Accessibility in Regulating theJournal of fungi (Basel, Switzerland) · 2021
    Review
  11. Cellular Localization of Carbonic Anhydrase Nce103p inInternational journal of molecular sciences · 2020
    Article
  12. Article
  13. Article
  14. COCurrent genetics · 2017
    Review
  15. The Transcriptional Response ofG3 (Bethesda, Md.) · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 7 countries.

Fabien CottierSchool of Biosciences, University of Kent, Canterbury, United Kingdom.
Martine Raymond
Oliver Kurzai
Marianne Bolstad
Worraanong Leewattanapasuk
Claudia Jiménez-López
Michael C Lorenz
Dominique Sanglard
Libuše Váchová
Norman Pavelka
Zdena Palková
Fritz A Mühlschlegel
University of Kent · GBCharles University · CZThe University of Texas Health Science Center at Houston · USEast Kent Hospitals University NHS Foundation Trust · GBInstitute for Research in Immunology and Cancer · CALeibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI) · DESingapore Immunology Network · SGUniversity of Lausanne · CH

Funding

Roles of acetate metabolism in the virulence of Candida albicansR01AI075091 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LORENZ, MICHAEL C · 2007 to 2017
$4.0M
Understanding Immunomodulation by Candida albicansR21AI071134 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LORENZ, MICHAEL C · 2008 to 2009
$372k
Biotechnology and Biological Sciences Research CouncilCIHR MOP-84341Howard Hughes Medical InstituteMedical Research Council G0601049NIAID NIH HHS R01 AI075091NIAID NIH HHS R21 AI071134NIAID NIH HHS R21AI071134
6 · The paper itself

Abstract

Like many organisms the fungal pathogen Candida albicans senses changes in the environmental CO(2) concentration. This response involves two major proteins: adenylyl cyclase and carbonic anhydrase (CA). Here, we demonstrate that CA expression is tightly controlled by the availability of CO(2) and identify the bZIP transcription factor Rca1p as the first CO(2) regulator of CA expression in yeast. We show that Rca1p upregulates CA expression during contact with mammalian phagocytes and demonstrate that serine 124 is critical for Rca1p signaling, which occurs independently of adenylyl cyclase. ChIP-chip analysis and the identification of Rca1p orthologs in the model yeast Saccharomyces cerevisiae (Cst6p) point to the broad significance of this novel pathway in fungi. By using advanced microscopy we visualize for the first time the impact of CO(2) build-up on gene expression in entire fungal populations with an exceptional level of detail. Our results present the bZIP protein Rca1p as the first fungal regulator of carbonic anhydrase, and reveal the existence of an adenylyl cyclase independent CO(2) sensing pathway in yeast. Rca1p appears to regulate cellular metabolism in response to CO(2) availability in environments as diverse as the phagosome, yeast communities or liquid culture.

Indexed as

Saccharomyces cerevisiaeAdenosine TriphosphatasesBasic-Leucine Zipper Transcription FactorsBiotaCarbon DioxideChromatin ImmunoprecipitationEnvironmentGene Expression ProfilingGene Expression Regulation, FungalMetalloendopeptidasesMicrobiological TechniquesMitochondrial ProteinsModels, BiologicalOligonucleotide Array Sequence AnalysisOrganisms, Genetically ModifiedPhagosomesAdenosine TriphosphatasesBasic-Leucine Zipper Transcription FactorsCarbon DioxideMetalloendopeptidasesMitochondrial ProteinsSaccharomyces cerevisiae ProteinsYTA12 protein, S cerevisiae

Identifiers

PMID22253597
PMCPMC3257301
OpenAlexW2002950258

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.