ArticleEvolutionary bioinformatics online2011
Factors affecting synonymous codon usage bias in chloroplast genome of oncidium gower ramsey.
Article in Evolutionary bioinformatics online, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
46 citing papers in PubMed.
- Complete chloroplast genome of Sabia discolor Dunn and comparative analysis with related species from Sabiaceae.BMC genomics · 2026Article
- Comparative plastome analyses reveal life-form-associated selection signatures in Orchidaceae.BMC plant biology · 2026Article
- Comparative analysis of complete chloroplast genomes reveals the phylogenetic relationships of Lygodium Sw. (Lygodiaceae) species in China.BMC genomics · 2026Article
- A Comprehensive Comparative Analysis and Phylogenetic Investigation of the Chloroplast Genome Sequences in FourCurrent issues in molecular biology · 2025Article
- Article
- Comparative Genomics ofInternational journal of molecular sciences · 2025Article
- Codon Usage Bias Analysis in the Chloroplast Genome ofCurrent issues in molecular biology · 2025Article
- Article
- Comparative Genomics and Phylogenetic Analyses ofEcology and evolution · 2025Article
- Article
- Comprehensive comparative analysis and development of molecular markers for Lasianthus species based on complete chloroplast genome sequences.BMC plant biology · 2024Article
- Comparative analysis of codon usage patterns in 16 chloroplast genomes of suborder Halimedineae.BMC genomics · 2024Article
- The adaptive evolution of Quercus section Ilex using the chloroplast genomes of two threatened species.Scientific reports · 2024Article
- Analysis of Codon Usage Bias in the Plastid Genome ofCurrent issues in molecular biology · 2024Article
- Plastome evolution of Engelhardia facilitates phylogeny of Juglandaceae.BMC plant biology · 2024Article
- Patterns in Genome-Wide Codon Usage Bias in Representative Species of Lycophytes and Ferns.Genes · 2024Article
- Article
- Article
- Comparison of chloroplast genomes and phylogenetic analysis of four species in Quercus section Cyclobalanopsis.Scientific reports · 2023Article
- Complete Chloroplast Genomes ofGenes · 2023Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Oncidium Gower Ramsey is a fascinating and important ornamental flower in floral industry. In this research, the complete nucleotide sequence of the chloroplast genome in Oncidium Gower Ramsey was studied, then analyzed using Codonw software. Correspondence analysis and method of effective number of codon as Nc-plot were conducted to analyze synonymous codon usage. According to the corresponding analysis, codon bias in the chloroplast genome of Oncidium Gower Ramsey is related to their gene length, mutation bias, gene hydropathy level of each protein, gene function and selection or gene expression only subtly affect codon usage. This study will provide insights into the molecular evolution study and high-level transgene expression.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.