Evidence map›Paper›PMID 22253012›Full record

ArticleJournal of cellular physiology2012

JC virus load in cerebrospinal fluid and transcriptional control region rearrangements may predict the clinical course of progressive multifocal leukoencephalopathy.

Serena Delbue, Francesca Elia, Camilla Carloni, Eleonora Tavazzi, Enrico Marchioni, Silvia Carluccio, Lucia Signorini, Stefano Novati, Renato Maserati, Pasquale Ferrante

Abstract read
In one paragraph

Article in Journal of cellular physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Serena DelbueFondazione Ettore Sansavini, Health Science Foundation, Lugo, Ravenna, Italy.
Francesca Elia
Camilla Carloni
Eleonora Tavazzi
Enrico Marchioni
Silvia Carluccio
Lucia Signorini
Stefano Novati
Renato Maserati
Pasquale Ferrante
University of Milan · ITFondazione Istituto Neurologico Nazionale Casimiro Mondino · ITIstituti di Ricovero e Cura a Carattere Scientifico · ITLa Fondazione Ettore Sansavini per la Ricerca Scientifica · IT

Funding

Pathogenesis of leukoencephalopathies in HIV+ patientsR01MH072528 · NIMH · SAINT JOSEPH HOSPITAL · PI FERRANTE, PASQUALE · 2005 to 2009
$1.2M
NIMH NIH HHS MH072528NIMH NIH HHS R01 MH072528
6 · The paper itself

Abstract

Progressive multifocal leukoencephalopathy (PML) is a severe disease of the central nervous system (CNS), caused by infection with the Polyomavirus JC virus (JCV). Because there are no known treatments or prognostic factors, we performed a long-term study focusing mainly on cerebrospinal fluid (CSF) samples from PML patients to describe the virological features akin to the different forms of the disease. Twenty-eight PML patients were enrolled: 10 HIV-1+ patients with classical PML (CPML), 9 HIV-1+ patients with slowly progressing or stable neurological symptoms (benign PML), 3 HIV-1+ asymptomatic patients, and 6 HIV-1-negative patients. CSF, urine, and blood samples were collected at the enrollment (baseline) and every 6 months afterwards when possible. The JCV DNA and HIV-1 RNA loads were determined, and the JCV strains were characterized. At baseline, the mean CSF JCV load was log 6.0 ± 1.2 copies/ml for CPML patients, log 4.0 ± 1.0 copies/ml for benign PML patients, log 4.2 ± 0.5 copies/ml for asymptomatic PML patients, and log 5.8 ± 1.3 copies/ml for HIV-1-negative PML patients (CPML vs. benign: P < 0.01; CPML vs. asymptomatic: P < 0.05; HIV-1 negative vs. benign: P < 0.01). Organization of the JCV transcriptional control region (TCR) showed unusual archetype structures in two long-term survival patients; the NF1 sequence was found most commonly, whereas the Sp1 binding site was the most common for both CPML patients and HIV-1 negative patients. Our results suggest that the JCV load in the CSF and the organization of the TCR should be considered as indicators of PML clinical outcome.

Indexed as

Gene Expression Regulation, ViralAdultCerebrospinal FluidDNA, ViralFemaleFollow-Up StudiesHIV-1HIV InfectionsHIV Long Terminal RepeatHumansJC VirusLeukoencephalopathy, Progressive MultifocalMaleNeurofibromin 1RNA, ViralTranscription, GeneticDNA, ViralNeurofibromin 1RNA, Viral

Identifiers

PMID22253012
PMCPMC3330164
OpenAlexW2058827301

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.