Evidence map›Paper›PMID 22252899›Full record

ArticleNeurogenetics2012

Distinct DNA binding and transcriptional repression characteristics related to different ARX mutations.

Ginam Cho, MacLean P Nasrallah, Youngshin Lim, Jeffrey A Golden

Open access · greenAbstract read
In one paragraph

Article in Neurogenetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

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  5. Dissecting Gene Regulatory Networks Governing Human Cortical Cell Fate.bioRxiv : the preprint server for biology · 2025
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  8. X-Linked Epilepsies: A Narrative Review.International journal of molecular sciences · 2024
    Review
  9. Review
  10. Fetal and neonatal MRI features ofQuantitative imaging in medicine and surgery · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ginam ChoDepartment of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
MacLean P Nasrallah
Youngshin Lim
Jeffrey A Golden
University of Pennsylvania · USChildren's Hospital of Philadelphia · US

Funding

The Role of ARX in Normal and Abnormal Brain DevelopmentR01NS046616 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI GOLDEN, JEFFREY A · 2005 to 2013
$4.1M
NINDS NIH HHS NS46616NINDS NIH HHS R01 NS046616
6 · The paper itself

Abstract

Mutations in the Aristaless-related homeobox gene (ARX) are associated with a wide variety of neurologic disorders including lissencephaly, hydrocephaly, West syndrome, Partington syndrome, and X-linked intellectual disability with or without epilepsy. A genotype-phenotype correlation exists for ARX mutations; however, the molecular basis for this association has not been investigated. To begin understanding the molecular basis for ARX mutations, we tested the DNA binding sequence preference and transcriptional repression activity for Arx, deletion mutants and mutants associated with various neurologic disorders. We found DNA binding preferences of Arx are influenced by the amino acid sequences adjacent to the homeodomain. Mutations in the homeodomain show a loss of DNA binding activity, while the T333N and P353R homeodomain mutants still possess DNA binding activities, although less than the wild type. Transcription repression activity, the primary function of ARX, is reduced in all mutants except the L343Q, which has no DNA binding activity and does not functionally repress Arx targets. These data indicate that mutations in the homeodomain result in not only a loss of DNA binding activity but also loss of transcriptional repression activity. Our results provide novel insights into the pathogenesis of ARX-related disorders and possible directions to pursue potential therapeutic interventions.

Indexed as

MutationTranscription, GeneticAnimalsBase SequenceDNADNA Mutational AnalysisGene Expression RegulationHEK293 CellsHomeodomain ProteinsHumansLissencephalyMolecular Sequence DataTranscription FactorsARX protein, humanDNAHomeodomain ProteinsTranscription Factors

Identifiers

PMID22252899
PMCPMC3279587
OpenAlexW1999260084

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.